Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011551A_C01 KMC011551A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196983.1| putative protein; protein id: At5g14790.1, supp... 152 2e-36
ref|NP_566138.1| expressed protein; protein id: At3g01450.1, sup... 142 2e-33
gb|AAM61606.1| unknown [Arabidopsis thaliana] 141 7e-33
pir||G71423 hypothetical protein - Arabidopsis thaliana gi|22449... 69 4e-11
gb|AAM65484.1| unknown [Arabidopsis thaliana] 69 4e-11
>ref|NP_196983.1| putative protein; protein id: At5g14790.1, supported by cDNA:
98046., supported by cDNA: gi_20260677 [Arabidopsis
thaliana] gi|11358461|pir||T51424 hypothetical protein
T9L3_90 - Arabidopsis thaliana
gi|9755747|emb|CAC01878.1| putative protein [Arabidopsis
thaliana] gi|20260678|gb|AAM13237.1| putative protein
[Arabidopsis thaliana] gi|21618131|gb|AAM67181.1|
unknown [Arabidopsis thaliana]
gi|24899827|gb|AAN65128.1| putative protein [Arabidopsis
thaliana]
Length = 346
Score = 152 bits (385), Expect = 2e-36
Identities = 84/128 (65%), Positives = 101/128 (78%), Gaps = 4/128 (3%)
Frame = -1
Query: 588 PRIRAKASMCFSRSVPRLGAEGIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNV 409
PRIRAKAS+CFSRSVPRLG EGIK YGIDKL+Q AA+QLSDQLPESREAAR +L+ELQ+V
Sbjct: 217 PRIRAKASLCFSRSVPRLGVEGIKEYGIDKLVQAAASQLSDQLPESREAARTVLLELQSV 276
Query: 408 YEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQSQLSPLSAQAVLRVTSI--- 238
YEK L+ PET S + + + E EP +WE+FC+S+LS LSAQAVLRVT++
Sbjct: 277 YEKAHPLI------NPETSSPEEQQIPE-VEPITWETFCKSKLSALSAQAVLRVTNVVTV 329
Query: 237 -AREGLVS 217
AREGLV+
Sbjct: 330 TAREGLVT 337
>ref|NP_566138.1| expressed protein; protein id: At3g01450.1, supported by cDNA:
125711. [Arabidopsis thaliana]
gi|6692265|gb|AAF24615.1|AC010870_8 unknown protein
[Arabidopsis thaliana]
Length = 326
Score = 142 bits (359), Expect = 2e-33
Identities = 77/127 (60%), Positives = 93/127 (72%), Gaps = 3/127 (2%)
Frame = -1
Query: 588 PRIRAKASMCFSRSVPRLGAEGIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNV 409
PRIRAKAS CFSR VPRLG EGI+ YGI+KL+Q A++QLSDQLPESREAARA+L+ELQ V
Sbjct: 214 PRIRAKASTCFSRCVPRLGIEGIREYGIEKLVQAASSQLSDQLPESREAARAVLLELQTV 273
Query: 408 YEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQSQLSPLSAQAVLRVTS---I 238
Y+K ++ P E PEP +W+ FCQS LSPLSAQAV+RVT+ +
Sbjct: 274 YKKTTNVEPK----------------EEHPEPVTWQIFCQSNLSPLSAQAVIRVTNVAGV 317
Query: 237 AREGLVS 217
AREGLV+
Sbjct: 318 AREGLVA 324
>gb|AAM61606.1| unknown [Arabidopsis thaliana]
Length = 326
Score = 141 bits (355), Expect = 7e-33
Identities = 76/127 (59%), Positives = 93/127 (72%), Gaps = 3/127 (2%)
Frame = -1
Query: 588 PRIRAKASMCFSRSVPRLGAEGIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNV 409
PRIRAKAS CFSR VPRLG EGI+ YGI+KL+Q A++QLSD+LPESREAARA+L+ELQ V
Sbjct: 214 PRIRAKASTCFSRCVPRLGIEGIREYGIEKLVQAASSQLSDKLPESREAARAVLLELQTV 273
Query: 408 YEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQSQLSPLSAQAVLRVTS---I 238
Y+K ++ P E PEP +W+ FCQS LSPLSAQAV+RVT+ +
Sbjct: 274 YKKTTNVEPK----------------EEHPEPVTWQIFCQSNLSPLSAQAVIRVTNVAGV 317
Query: 237 AREGLVS 217
AREGLV+
Sbjct: 318 AREGLVA 324
>pir||G71423 hypothetical protein - Arabidopsis thaliana
gi|2244939|emb|CAB10361.1| hypothetical protein
[Arabidopsis thaliana] gi|7268331|emb|CAB78625.1|
hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 68.9 bits (167), Expect = 4e-11
Identities = 39/116 (33%), Positives = 71/116 (60%)
Frame = -1
Query: 588 PRIRAKASMCFSRSVPRLGAEGIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNV 409
PR+RAKA++ S V ++ ++ +G+ L Q+AA QLSD+LPE+REAAR++ + ++
Sbjct: 159 PRVRAKAAVSTSNCVSKMEVNEMEEFGMILLAQMAADQLSDKLPEAREAARSM---VNSL 215
Query: 408 YEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQSQLSPLSAQAVLRVTS 241
+EKF T +E+ + K E +W+ FC+ ++ L+AQA++++ +
Sbjct: 216 FEKF-------------TWNEEEDEEGSKQE--AWKKFCEKNVTGLNAQAMIKIVA 256
>gb|AAM65484.1| unknown [Arabidopsis thaliana]
Length = 296
Score = 68.9 bits (167), Expect = 4e-11
Identities = 39/116 (33%), Positives = 71/116 (60%)
Frame = -1
Query: 588 PRIRAKASMCFSRSVPRLGAEGIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNV 409
PR+RAKA++ S V ++ ++ +G+ L Q+AA QLSD+LPE+REAAR++ + ++
Sbjct: 197 PRVRAKAAVSTSNCVSKMEVNEMEEFGMVLLAQMAADQLSDKLPEAREAARSM---VNSL 253
Query: 408 YEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQSQLSPLSAQAVLRVTS 241
+EKF T +E+ + K E +W+ FC+ ++ L+AQA++++ +
Sbjct: 254 FEKF-------------TWNEEEDEEGSKQE--AWKKFCEKNVTGLNAQAMIKIVA 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,876,021
Number of Sequences: 1393205
Number of extensions: 9577790
Number of successful extensions: 35832
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 32800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35705
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
