Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011538A_C01 KMC011538A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702236.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.12
ref|NP_066194.2| NADH dehydrogenase subunit 5 [Schistosoma japon... 33 1.3
dbj|BAB33327.1| KIAA1657 protein [Homo sapiens] 33 1.7
ref|NP_704045.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.9
ref|NP_213103.1| heme O oxygenase [Aquifex aeolicus] gi|7515000|... 32 5.0
>ref|NP_702236.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497416|gb|AAN36960.1|AE014821_47 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 864
Score = 37.0 bits (84), Expect = 0.12
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Frame = +3
Query: 87 LIILRINSNT*KLLIKIYLYN*F*LLKFR*IFKHAIVKSKLIIFIKKNYVY--LIWLINN 260
+I L IN+ + IYLYN LL F K IVK KN VY +WL NN
Sbjct: 684 IIDLYINNLCDAKTLSIYLYN---LLPFT---KQTIVKKNRFNHTIKNVVYNTYLWLNNN 737
Query: 261 KEV-NEQNDSLFIILRNRSLKSTGTLVSGADTV*TPNFVSVSFFLPYLLYHIHYFIFISL 437
K V NEQ + I+ N + TL+ N +S LP L + F ++S
Sbjct: 738 KNVSNEQGQNNKILFYNNIKVTNYTLLQILSIYICKNVYFIS--LPILASLLRSFSYLSF 795
Query: 438 S 440
+
Sbjct: 796 N 796
>ref|NP_066194.2| NADH dehydrogenase subunit 5 [Schistosoma japonicum]
gi|12248307|gb|AAG13134.2| NADH dehydrogenase subunit 5
[Schistosoma japonicum]
Length = 528
Score = 33.5 bits (75), Expect = 1.3
Identities = 10/29 (34%), Positives = 21/29 (71%)
Frame = +1
Query: 403 YITFIISFSYLCLCHWERHLYPYVNECKS 489
Y+ +I ++ +LCL WE +++ ++N+C S
Sbjct: 474 YVLYIWNYLFLCLFRWEIYMFEFLNDCVS 502
>dbj|BAB33327.1| KIAA1657 protein [Homo sapiens]
Length = 127
Score = 33.1 bits (74), Expect = 1.7
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 369 FVSVSFFLPYLL-YHIHYFIFISLSLSLGASSIP 467
F+S+SFFLP+ L + + +F+ LSLSL S +P
Sbjct: 19 FLSLSFFLPFFLSFFLSFFLSFFLSLSLSPSFLP 52
>ref|NP_704045.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498783|emb|CAD50853.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2910
Score = 32.0 bits (71), Expect = 3.9
Identities = 21/71 (29%), Positives = 42/71 (58%), Gaps = 3/71 (4%)
Frame = +3
Query: 81 ISLIILRINSNT*KLLIKIYLYN*F*LLKF--R*IFKHAIVKSKLIIFIKKNYVYLIWLI 254
+ +++L +++N ++ LYN F ++KF + IF H I IF+K Y++++
Sbjct: 946 VDMLLLLLSNNIYNKIMSTTLYNNFDIIKFIMKWIFVHVIK-----IFVKD--TYMLYIN 998
Query: 255 NNK-EVNEQND 284
NN+ ++NE N+
Sbjct: 999 NNQGKINESNE 1009
>ref|NP_213103.1| heme O oxygenase [Aquifex aeolicus] gi|7515000|pir||D70314 heme O
oxygenase - Aquifex aeolicus gi|2982889|gb|AAC06508.1|
heme O oxygenase [Aquifex aeolicus VF5]
Length = 296
Score = 31.6 bits (70), Expect = 5.0
Identities = 23/71 (32%), Positives = 32/71 (44%)
Frame = +3
Query: 234 VYLIWLINNKEVNEQNDSLFIILRNRSLKSTGTLVSGADTV*TPNFVSVSFFLPYLLYHI 413
V L I KE N+ + F+++ + L T++SG FFLPYL HI
Sbjct: 220 VILSLFIMFKEFNKYSLITFLLMTAQILAGVATVISG-------------FFLPYLFLHI 266
Query: 414 HYFIFISLSLS 446
FI L +S
Sbjct: 267 AIGFFIVLWVS 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,218,387
Number of Sequences: 1393205
Number of extensions: 5968460
Number of successful extensions: 13074
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13068
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
