Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011509A_C01 KMC011509A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [... 204 1e-51
ref|NP_199285.1| putative protein; protein id: At5g44720.1, supp... 177 1e-43
gb|AAM65550.1| unknown [Arabidopsis thaliana] 175 5e-43
ref|ZP_00033794.1| hypothetical protein [Burkholderia fungorum] 98 1e-19
ref|NP_744278.1| conserved hypothetical protein [Pseudomonas put... 79 4e-14
>ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [Arabidopsis
thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22
[Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1|
unknown protein [Arabidopsis thaliana]
Length = 318
Score = 204 bits (518), Expect = 1e-51
Identities = 100/194 (51%), Positives = 138/194 (70%)
Frame = +1
Query: 34 SVSPILTITASATTTEIPGGKVSDIFVYPIKSGRGISVSSAPFTPAGFRWDREWMVVNSR 213
++SP+L+ + ++ +VS +FVYPIKS RGIS+S A TP GFRWDR W++VNS+
Sbjct: 4 TLSPLLSPSPASEVA----ARVSSLFVYPIKSCRGISLSQAALTPTGFRWDRNWLIVNSK 59
Query: 214 GKAISQRNEPKLA*VHVDLPNEAFAEDGQAPEDSFMELKAPGMQPLKVG*GKQPELENGF 393
G+ ++QR EPKL+ + V++P AF ED + + S M ++APGM LKV K ++ +G
Sbjct: 60 GRGLTQRVEPKLSLIEVEMPKHAFGEDWEPEKSSNMVVRAPGMDALKVSLAKPDKIADGV 119
Query: 394 SVWEWTGSAWDEGSEASEWFSACSGKPSQLVRFNTASEVRQVDPDYVKGHHPTLFTDGYP 573
SVWEW+GSA DEG EAS+WF+ GKP +LVRFN+A E R VDP+Y G H +F+D YP
Sbjct: 120 SVWEWSGSALDEGEEASQWFTNFVGKPCRLVRFNSAYETRPVDPNYAPG-HIAMFSDMYP 178
Query: 574 FLLSSQDSLNALNE 615
FLL SQ SL++LN+
Sbjct: 179 FLLISQGSLDSLNK 192
>ref|NP_199285.1| putative protein; protein id: At5g44720.1, supported by cDNA:
4029., supported by cDNA: gi_19423896, supported by
cDNA: gi_21280995 [Arabidopsis thaliana]
gi|2660677|gb|AAC79148.1| unknown protein [Arabidopsis
thaliana] gi|9758376|dbj|BAB08825.1| contains similarity
to unknown~gene_id:K23L20.6 [Arabidopsis thaliana]
gi|19423897|gb|AAL87349.1| unknown protein [Arabidopsis
thaliana] gi|21280996|gb|AAM45094.1| unknown protein
[Arabidopsis thaliana]
Length = 308
Score = 177 bits (449), Expect = 1e-43
Identities = 88/175 (50%), Positives = 118/175 (67%)
Frame = +1
Query: 88 GGKVSDIFVYPIKSGRGISVSSAPFTPAGFRWDREWMVVNSRGKAISQRNEPKLA*VHVD 267
G K+ + +YPIKS RGISV A T GF+WDR W+VVN +G+A +QR EP LA V +
Sbjct: 4 GLKIQSLVIYPIKSCRGISVPQATVTHTGFQWDRYWLVVNYKGRAYTQRVEPTLALVESE 63
Query: 268 LPNEAFAEDGQAPEDSFMELKAPGMQPLKVG*GKQPELENGFSVWEWTGSAWDEGSEASE 447
LP EAF ED + DS + ++APGM PLK+ + + G S+WEW+GSA+DEG EA++
Sbjct: 64 LPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSSVAEGVSMWEWSGSAFDEGEEAAK 123
Query: 448 WFSACSGKPSQLVRFNTASEVRQVDPDYVKGHHPTLFTDGYPFLLSSQDSLNALN 612
WFS GK S+LVRFN +E R P++ G + T F D +PFL++SQ SL+ LN
Sbjct: 124 WFSDYLGKQSRLVRFNKDTETRPSPPEFAAG-YSTTFMDMFPFLVASQGSLDHLN 177
>gb|AAM65550.1| unknown [Arabidopsis thaliana]
Length = 308
Score = 175 bits (443), Expect = 5e-43
Identities = 87/175 (49%), Positives = 117/175 (66%)
Frame = +1
Query: 88 GGKVSDIFVYPIKSGRGISVSSAPFTPAGFRWDREWMVVNSRGKAISQRNEPKLA*VHVD 267
G K+ + +YPIKS RGISV A T GF+WDR W+VVN +G+A +QR EP LA V +
Sbjct: 4 GLKIQSLVIYPIKSCRGISVPQATVTHTGFQWDRYWLVVNYKGRAYTQRVEPTLALVESE 63
Query: 268 LPNEAFAEDGQAPEDSFMELKAPGMQPLKVG*GKQPELENGFSVWEWTGSAWDEGSEASE 447
LP EAF ED + DS + ++APGM PLK+ + + G S+WEW+GSA+DEG EA++
Sbjct: 64 LPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSSVAEGVSMWEWSGSAFDEGEEAAK 123
Query: 448 WFSACSGKPSQLVRFNTASEVRQVDPDYVKGHHPTLFTDGYPFLLSSQDSLNALN 612
WFS GK S+LVRF +E R P++ G + T F D +PFL++SQ SL+ LN
Sbjct: 124 WFSDYLGKQSRLVRFKKDTETRPSPPEFAAG-YSTTFMDMFPFLVASQGSLDHLN 177
>ref|ZP_00033794.1| hypothetical protein [Burkholderia fungorum]
Length = 291
Score = 97.8 bits (242), Expect = 1e-19
Identities = 64/179 (35%), Positives = 95/179 (52%), Gaps = 7/179 (3%)
Frame = +1
Query: 97 VSDIFVYPIKSGRGISVSSAPFTPAGFRWDREWMVVNSRGKAISQRNEPKLA*VHVDLPN 276
+S++FVYPIKS GI++ A G +DR WMV + G ++QR P++A + V++
Sbjct: 4 ISELFVYPIKSCAGIALREARLLATGLEYDRCWMVTDPAGAMLTQRAYPRMALIKVEIG- 62
Query: 277 EAFAEDGQAPEDSFMELKAPGMQPLKVG*G-----KQPELENGFSVWEWTGSAWDEGSEA 441
A+D + ++APGM L+ P ++ VW D G+ +
Sbjct: 63 ---ADD--------LVIRAPGMSELRTPLNAARLDAAPAVQT--KVWRDAAYGLDTGAAS 109
Query: 442 SEWFSACSGKPSQLVRFNTASEVRQVDPDYVK--GHHPTLFTDGYPFLLSSQDSLNALN 612
+ WFSA G P++L+RF+ E R VDPDY G T FTDG+P L+ Q SL+ LN
Sbjct: 110 AAWFSAFLGVPARLLRFDPGHE-RIVDPDYTDSVGGATTYFTDGFPLLVIGQASLDDLN 167
>ref|NP_744278.1| conserved hypothetical protein [Pseudomonas putida KT2440]
gi|24983658|gb|AAN67742.1|AE016405_5 conserved
hypothetical protein [Pseudomonas putida KT2440]
Length = 267
Score = 79.3 bits (194), Expect = 4e-14
Identities = 53/173 (30%), Positives = 80/173 (45%), Gaps = 1/173 (0%)
Frame = +1
Query: 97 VSDIFVYPIKSGRGISVSSAPFTPAGFRWDREWMVV-NSRGKAISQRNEPKLA*VHVDLP 273
+S+++ YP+KSG+ S+ ++P G + DR WMVV G+ ++QR P+L +
Sbjct: 3 LSELYRYPVKSGQAQSLKASPVGLLGLQGDRRWMVVEEENGRFLTQRAWPQLGQI----- 57
Query: 274 NEAFAEDGQAPEDSFMELKAPGMQPLKVG*GKQPELENGFSVWEWTGSAWDEGSEASEWF 453
D + + L+APG PL+V + G ++W T D G A+ W
Sbjct: 58 ------DASDDDSGQLLLQAPGQAPLRVPVPPADDALRGVTIWRDTLRVPDAGDAAAAWL 111
Query: 454 SACSGKPSQLVRFNTASEVRQVDPDYVKGHHPTLFTDGYPFLLSSQDSLNALN 612
S GK +LV R + Y F DG+P LL Q SL+ LN
Sbjct: 112 SELLGKAVRLVHC-PEQRARYLPNGYGLNSDRAAFPDGFPLLLIGQGSLDELN 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,022,030
Number of Sequences: 1393205
Number of extensions: 14148005
Number of successful extensions: 100606
Number of sequences better than 10.0: 367
Number of HSP's better than 10.0 without gapping: 47955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82273
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
