Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011493A_C01 KMC011493A_c01
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20458.1| unknown protein [Arabidopsis thaliana] gi|2213635... 157 1e-37
ref|NP_567650.1| expressed protein; protein id: At4g22190.1, sup... 157 1e-37
dbj|BAB63878.1| P0487E11.18 [Oryza sativa (japonica cultivar-gro... 37 0.42
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g... 37 0.42
dbj|BAB90477.1| putative homeodomain-leucine zipper [Oryza sativ... 36 0.55
>gb|AAM20458.1| unknown protein [Arabidopsis thaliana] gi|22136352|gb|AAM91254.1|
unknown protein [Arabidopsis thaliana]
Length = 387
Score = 157 bits (398), Expect = 1e-37
Identities = 87/155 (56%), Positives = 101/155 (65%), Gaps = 4/155 (2%)
Frame = -2
Query: 780 GAPVARKVNSAPCSRSNSAGESKSRKWPSSPGRPGIQVGRSSPVWQVRRGGTGGSSKN-S 604
GAP RKV+SAPCSRSNS GESKSRKWPSSP R G+ +GR+SPVWQVRRGG K
Sbjct: 237 GAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGGGAPVGKTIP 296
Query: 603 EPXAEKVSKRETPAPRRSKL---APKAKVLSLNVPMCIGYRHHLSCRSDENSAVGVSSAT 433
EP V KRE P R+ K + KAKVL+LNVPMCIGYR LSCR++E+S G S+
Sbjct: 297 EPMGRVVGKREIPETRKGKTVIESNKAKVLNLNVPMCIGYRSRLSCRTEESSGGGNSNIG 356
Query: 432 SDGGASGRHNSGGECSNDGGGGVNLFNLRNLFTKK 328
SD +N+ +N G LF RNLF KK
Sbjct: 357 SD----NNNNNNANANNPNPNG--LFGFRNLFIKK 385
>ref|NP_567650.1| expressed protein; protein id: At4g22190.1, supported by cDNA:
6848. [Arabidopsis thaliana] gi|7486831|pir||T04900
hypothetical protein T10I14.20 - Arabidopsis thaliana
gi|2832669|emb|CAA16769.1| hypothetical protein
[Arabidopsis thaliana] gi|7269064|emb|CAB79174.1|
hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 157 bits (398), Expect = 1e-37
Identities = 87/155 (56%), Positives = 101/155 (65%), Gaps = 4/155 (2%)
Frame = -2
Query: 780 GAPVARKVNSAPCSRSNSAGESKSRKWPSSPGRPGIQVGRSSPVWQVRRGGTGGSSKN-S 604
GAP RKV+SAPCSRSNS GESKSRKWPSSP R G+ +GR+SPVWQVRRGG K
Sbjct: 189 GAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGGGAPVGKTIP 248
Query: 603 EPXAEKVSKRETPAPRRSKL---APKAKVLSLNVPMCIGYRHHLSCRSDENSAVGVSSAT 433
EP V KRE P R+ K + KAKVL+LNVPMCIGYR LSCR++E+S G S+
Sbjct: 249 EPMGRVVGKREIPETRKGKTVIESNKAKVLNLNVPMCIGYRSRLSCRTEESSGGGNSNIG 308
Query: 432 SDGGASGRHNSGGECSNDGGGGVNLFNLRNLFTKK 328
SD +N+ +N G LF RNLF KK
Sbjct: 309 SD----NNNNNNANANNPNPNG--LFGFRNLFIKK 337
>dbj|BAB63878.1| P0487E11.18 [Oryza sativa (japonica cultivar-group)]
gi|15623924|dbj|BAB67980.1| B1088D01.2 [Oryza sativa
(japonica cultivar-group)]
Length = 218
Score = 36.6 bits (83), Expect = 0.42
Identities = 29/103 (28%), Positives = 40/103 (38%)
Frame = -2
Query: 675 IQVGRSSPVWQVRRGGTGGSSKNSEPXAEKVSKRETPAPRRSKLAPKAKVLSLNVPMCIG 496
+ R SP + RRG G + P +R +P+ L P+ VL + M
Sbjct: 7 VHSARESPKSKRRRGAKGRGGERRRPSGRGGGRRPSPS-----LTPR--VLRSSAGMQNP 59
Query: 495 YRHHLSCRSDENSAVGVSSATSDGGASGRHNSGGECSNDGGGG 367
HH S S S ++A S G H+ S GGGG
Sbjct: 60 GGHHASPASAAKSKSSTAAAASASGQGSSHHHHHHHSGGGGGG 102
>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
gi|28828387|gb|AAM09303.2| similar to Plasmodium
lophurae. Histidine-rich glycoprotein precursor
[Dictyostelium discoideum]
Length = 233
Score = 36.6 bits (83), Expect = 0.42
Identities = 11/32 (34%), Positives = 16/32 (49%)
Frame = +3
Query: 366 PHRPHHYYTHHRYYDGH*RHRQRWRYSHRRHY 461
PH PHH + HH ++ H H + H H+
Sbjct: 64 PHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHH 95
Score = 35.0 bits (79), Expect = 1.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 369 HRPHHYYTHHRYYDGH*RHRQRWRYSHRRHY 461
H PHH++ HH ++ H H + H H+
Sbjct: 108 HHPHHHHHHHHHHHHHHHHHHHHHHHHHHHH 138
Score = 34.3 bits (77), Expect = 2.1
Identities = 10/32 (31%), Positives = 16/32 (49%)
Frame = +3
Query: 366 PHRPHHYYTHHRYYDGH*RHRQRWRYSHRRHY 461
PH HH++ HH ++ H H + H H+
Sbjct: 110 PHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 141
Score = 33.9 bits (76), Expect = 2.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 366 PHRPHHYYTHHRYYDGH*RHRQRWRYSHRRHY 461
PH PHH+ HH + H H + H H+
Sbjct: 97 PHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHH 128
Score = 32.3 bits (72), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 366 PHRPHHYYTHHRYYDGH*RHRQRWRYSHRRHY 461
PH HH + HH ++ H H + H H+
Sbjct: 104 PHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHH 135
>dbj|BAB90477.1| putative homeodomain-leucine zipper [Oryza sativa (japonica
cultivar-group)]
Length = 316
Score = 36.2 bits (82), Expect = 0.55
Identities = 28/105 (26%), Positives = 47/105 (44%)
Frame = -2
Query: 699 PSSPGRPGIQVGRSSPVWQVRRGGTGGSSKNSEPXAEKVSKRETPAPRRSKLAPKAKVLS 520
P+S RP I +S+ + ++ G GG + E+V + + P P R K P + V
Sbjct: 44 PASAARPSIPTHQST-IARLAVTGCGGCAS----ATERVRRGDWPGPAREK--PASDVTG 96
Query: 519 LNVPMCIGYRHHLSCRSDENSAVGVSSATSDGGASGRHNSGGECS 385
L + M + G+SS+ S+G +N+GG C+
Sbjct: 97 LELTMAVP---------------GLSSSGSEGAGCNNNNAGGGCN 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 675,811,465
Number of Sequences: 1393205
Number of extensions: 15722159
Number of successful extensions: 100370
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 76694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96876
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
