Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011461A_C01 KMC011461A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563755.1| expressed protein; protein id: At1g05960.1, sup... 90 1e-17
pir||F86194 hypothetical protein [imported] - Arabidopsis thalia... 90 1e-17
gb|AAK56279.1|AF367291_1 At1g05960/T21E18_20 [Arabidopsis thalia... 90 1e-17
ref|NP_197607.1| putative protein; protein id: At5g21080.1 [Arab... 89 4e-17
ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [... 85 6e-16
>ref|NP_563755.1| expressed protein; protein id: At1g05960.1, supported by cDNA:
gi_14194168 [Arabidopsis thaliana]
Length = 982
Score = 90.1 bits (222), Expect = 1e-17
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -2
Query: 535 NDRKIGKLCDYASPHLLPIPQLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCKEQM 356
NDRKIGKLC+YAS + L IP++ LEQ+CYKELRN N+ S K+V+CIYKK L SCKEQM
Sbjct: 50 NDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQM 109
Query: 355 FSLWANTLSYI 323
+ LS +
Sbjct: 110 PLFSCSLLSIV 120
>pir||F86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810459|gb|AAF80120.1|AC024174_2 Contains similarity
to an unknown protein T11A7.7 gi|2335096 from
Arabidopsis thaliana BAC T11A7 gb|AC002339 and contains
a tropomyosin PF|00261 domain. ESTs gb|AI995205,
gb|N37925, gb|F13889, gb|AV523107, gb|AV535948,
gb|AV558461, gb|F13888 come from this gene
Length = 1628
Score = 90.1 bits (222), Expect = 1e-17
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -2
Query: 535 NDRKIGKLCDYASPHLLPIPQLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCKEQM 356
NDRKIGKLC+YAS + L IP++ LEQ+CYKELRN N+ S K+V+CIYKK L SCKEQM
Sbjct: 50 NDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQM 109
Query: 355 FSLWANTLSYI 323
+ LS +
Sbjct: 110 PLFSCSLLSIV 120
>gb|AAK56279.1|AF367291_1 At1g05960/T21E18_20 [Arabidopsis thaliana]
gi|25090223|gb|AAN72256.1| At1g05960/T21E18_20
[Arabidopsis thaliana]
Length = 731
Score = 90.1 bits (222), Expect = 1e-17
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -2
Query: 535 NDRKIGKLCDYASPHLLPIPQLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCKEQM 356
NDRKIGKLC+YAS + L IP++ LEQ+CYKELRN N+ S K+V+CIYKK L SCKEQM
Sbjct: 50 NDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQM 109
Query: 355 FSLWANTLSYI 323
+ LS +
Sbjct: 110 PLFSCSLLSIV 120
>ref|NP_197607.1| putative protein; protein id: At5g21080.1 [Arabidopsis thaliana]
Length = 980
Score = 88.6 bits (218), Expect = 4e-17
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = -2
Query: 535 NDRKIGKLCDYASPHLLPIPQLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCKEQM 356
NDRKIGKLC+YA+ + L IP++ +LEQRCYKELR E HS KIVM IYKK L SC EQM
Sbjct: 50 NDRKIGKLCEYAAKNPLRIPKITTSLEQRCYKELRMEQFHSVKIVMSIYKKLLVSCNEQM 109
Query: 355 FSLWANTLSYI 323
++ L I
Sbjct: 110 LLFASSYLGLI 120
>ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [Arabidopsis
thaliana] gi|25408758|pir||F84846 hypothetical protein
At2g41830 [imported] - Arabidopsis thaliana
gi|2335096|gb|AAC02765.1| hypothetical protein
[Arabidopsis thaliana]
Length = 961
Score = 84.7 bits (208), Expect = 6e-16
Identities = 38/63 (60%), Positives = 50/63 (79%), Gaps = 3/63 (4%)
Frame = -2
Query: 535 NDRKIGKLCDYASPHLLPIP---QLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCK 365
NDRKIGKLC+YA+ + + +P Q+ ++LE RCYKELRNEN HS KI MCIY++ L +CK
Sbjct: 54 NDRKIGKLCEYAAKNAVRMPKFFQISDSLEHRCYKELRNENFHSAKIAMCIYRRLLVTCK 113
Query: 364 EQM 356
EQ+
Sbjct: 114 EQI 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,016,120
Number of Sequences: 1393205
Number of extensions: 7933284
Number of successful extensions: 14006
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14001
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
