Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011448A_C01 KMC011448A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_649581.1| CG1098-PA [Drosophila melanogaster] gi|5052670|... 35 0.70
ref|NP_056178.2| zinc finger, imprinted 2 [Homo sapiens] gi|1149... 34 1.2
gb|EAA34930.1| hypothetical protein [Neurospora crassa] 34 1.2
gb|AAG35741.1|AF208969_1 Kruppel-type zinc finger protein [Homo ... 34 1.2
dbj|BAB85588.1| zinc finger protein [Homo sapiens] 34 1.2
>ref|NP_649581.1| CG1098-PA [Drosophila melanogaster]
gi|5052670|gb|AAD38665.1|AF145690_1 BcDNA.LD28657
[Drosophila melanogaster] gi|7296681|gb|AAF51961.1|
CG1098-PA [Drosophila melanogaster]
Length = 637
Score = 34.7 bits (78), Expect = 0.70
Identities = 23/56 (41%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Frame = -1
Query: 368 ICHDAFV*PSSYLPDTNAYKGRE-RERERERERGKAYICGINWTALFCMALDLEIY 204
I H+ V S +PD Y R RERERERERG Y + A + L+IY
Sbjct: 252 IQHNGLVKIGSVVPDAVHYSVRRGRERERERERGAHYFQAPEYGAADQLTAALDIY 307
>ref|NP_056178.2| zinc finger, imprinted 2 [Homo sapiens]
gi|11494020|gb|AAG35739.1|AF208967_1 Kruppel-type zinc
finger protein [Homo sapiens]
gi|11494022|gb|AAG35740.1|AF208968_1 Kruppel-type zinc
finger protein [Homo sapiens]
gi|11494026|gb|AAG35742.1|AF208970_1 Kruppel-type zinc
finger protein [Homo sapiens] gi|11991779|gb|AAG42324.1|
paternally expressed gene 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 383 FYASNICHDAFV*PSSYLPDTNAYKG------RERERERERERGKAY 261
FY +C + F+ S+ + + G RE ERERERERG+ +
Sbjct: 562 FYECRVCKETFLHSSALIEHQKIHFGDDKDNEREHERERERERGETF 608
>gb|EAA34930.1| hypothetical protein [Neurospora crassa]
Length = 397
Score = 33.9 bits (76), Expect = 1.2
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 309 RERERERERERER*SIYMRD-*LDRIILHGFGLGDLPSN 196
+ERERERERE+ER +I + D L + I+ G LPSN
Sbjct: 111 KEREREREREKERDAITIEDLTLPKSIITRLAKGVLPSN 149
>gb|AAG35741.1|AF208969_1 Kruppel-type zinc finger protein [Homo sapiens]
gi|11991780|gb|AAG42325.1| paternally expressed gene 3
isoform 2 [Homo sapiens]
Length = 1462
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 383 FYASNICHDAFV*PSSYLPDTNAYKG------RERERERERERGKAY 261
FY +C + F+ S+ + + G RE ERERERERG+ +
Sbjct: 436 FYECRVCKETFLHSSALIEHQKIHFGDDKDNEREHERERERERGETF 482
>dbj|BAB85588.1| zinc finger protein [Homo sapiens]
Length = 1308
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 383 FYASNICHDAFV*PSSYLPDTNAYKG------RERERERERERGKAY 261
FY +C + F+ S+ + + G RE ERERERERG+ +
Sbjct: 282 FYECRVCKETFLHSSALIEHQKIHFGDDKDNEREHERERERERGETF 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,046,325
Number of Sequences: 1393205
Number of extensions: 9370183
Number of successful extensions: 61586
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 31545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47969
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
