Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011447A_C01 KMC011447A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194864.2| hypothetical protein; protein id: At4g31360.1, ... 72 3e-12
ref|NP_565570.1| expressed protein; protein id: At2g24440.1, sup... 66 2e-10
ref|NP_570213.1| SPV053 hypothetical protein [Swinepox virus] gi... 31 8.9
>ref|NP_194864.2| hypothetical protein; protein id: At4g31360.1, supported by cDNA:
gi_17065485, supported by cDNA: gi_20148644 [Arabidopsis
thaliana] gi|17065486|gb|AAL32897.1| Unknown protein
[Arabidopsis thaliana] gi|20148645|gb|AAM10213.1|
unknown protein [Arabidopsis thaliana]
Length = 186
Score = 72.4 bits (176), Expect = 3e-12
Identities = 32/65 (49%), Positives = 51/65 (78%)
Frame = -3
Query: 500 REALDPKLPAGTTVILNPKKARKGCFEIRDKGGEKFISLLQLKDPYDALMALDIHQIVTD 321
+EAL+ +P G TV LNP+K R+GCFEIR++GG+ FISLL++K P+ + ALD+ +++ D
Sbjct: 122 KEALEGAVP-GVTVSLNPEKPRRGCFEIREEGGQTFISLLEMKRPFAPMKALDMEEVIED 180
Query: 320 ITEQI 306
I +++
Sbjct: 181 IIKKV 185
>ref|NP_565570.1| expressed protein; protein id: At2g24440.1, supported by cDNA:
154487. [Arabidopsis thaliana] gi|25361021|pir||F84636
hypothetical protein At2g24440 [imported] - Arabidopsis
thaliana gi|4337201|gb|AAD18115.1| expressed protein
[Arabidopsis thaliana] gi|21553632|gb|AAM62725.1|
unknown [Arabidopsis thaliana]
gi|21805670|gb|AAM76749.1| hypothetical protein
[Arabidopsis thaliana]
Length = 183
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/65 (46%), Positives = 46/65 (70%)
Frame = -3
Query: 500 REALDPKLPAGTTVILNPKKARKGCFEIRDKGGEKFISLLQLKDPYDALMALDIHQIVTD 321
+E L+ +P G V +NP K R+GCFEIR++GGE FISLL +K P+ + L++ +++ D
Sbjct: 119 KEGLEEAVP-GIIVTVNPDKPRRGCFEIREEGGETFISLLAMKRPFTPMKELNMEEVIAD 177
Query: 320 ITEQI 306
I E+I
Sbjct: 178 IVEKI 182
>ref|NP_570213.1| SPV053 hypothetical protein [Swinepox virus]
gi|18448546|gb|AAL69792.1| SPV053 hypothetical protein
[Swinepox virus]
Length = 173
Score = 30.8 bits (68), Expect = 8.9
Identities = 20/65 (30%), Positives = 30/65 (45%)
Frame = -3
Query: 470 GTTVILNPKKARKGCFEIRDKGGEKFISLLQLKDPYDALMALDIHQIVTDITEQIAADSI 291
G+T L P E K G + I++ +L ++ L +H I++DI IAAD
Sbjct: 52 GSTCALEPIDDDCYAIEASYKNGVRMINIKELLKDAKSIKILVLHDIISDIKMAIAADIA 111
Query: 290 SNEIG 276
IG
Sbjct: 112 ITFIG 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,873,465
Number of Sequences: 1393205
Number of extensions: 6878018
Number of successful extensions: 13719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13717
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
