Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011446A_C01 KMC011446A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195791.1| putative protein; protein id: At5g01710.1, supp... 100 9e-30
ref|NP_190908.1| putative protein; protein id: At3g53400.1, supp... 50 3e-09
ref|NP_195939.1| putative protein; protein id: At5g03190.1 [Arab... 45 2e-06
gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thali... 31 0.010
ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [... 31 0.010
>ref|NP_195791.1| putative protein; protein id: At5g01710.1, supported by cDNA:
gi_15810368 [Arabidopsis thaliana]
gi|11357829|pir||T48192 hypothetical protein F7A7.230 -
Arabidopsis thaliana gi|7327830|emb|CAB82287.1| putative
protein [Arabidopsis thaliana]
gi|15810369|gb|AAL07072.1| unknown protein [Arabidopsis
thaliana] gi|23296924|gb|AAN13203.1| unknown protein
[Arabidopsis thaliana] gi|24417484|gb|AAN60352.1|
unknown [Arabidopsis thaliana]
Length = 513
Score = 100 bits (250), Expect(2) = 9e-30
Identities = 47/69 (68%), Positives = 53/69 (76%)
Frame = -3
Query: 479 IKGIDFAQCLKYTVSKYDFVVMKMDVEGTEFDLIPRLFVTGAICLVDEVFLVCQYHSWQR 300
I+G DFA LK +V + DFVVMKMDVEGTEFDLIPRL TGAICL+DE+FL C Y+ WQR
Sbjct: 419 IQGFDFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYNRWQR 478
Query: 299 SCPGHEEFK 273
CPG K
Sbjct: 479 CCPGQRSQK 487
Score = 50.4 bits (119), Expect(2) = 9e-30
Identities = 22/32 (68%), Positives = 25/32 (77%)
Frame = -1
Query: 289 GTRSSKYEKTYDPCLELVHSLRPSGVLVHQWF 194
G RS KY KTY+ CLEL +SLR GVLVHQW+
Sbjct: 482 GQRSQKYNKTYNQCLELFNSLRQRGVLVHQWW 513
>ref|NP_190908.1| putative protein; protein id: At3g53400.1, supported by cDNA:
gi_17528947 [Arabidopsis thaliana]
gi|11282324|pir||T45880 hypothetical protein F4P12.100 -
Arabidopsis thaliana gi|6729491|emb|CAB67647.1| putative
protein [Arabidopsis thaliana]
Length = 466
Score = 50.4 bits (119), Expect(2) = 3e-09
Identities = 26/53 (49%), Positives = 31/53 (58%)
Frame = -3
Query: 467 DFAQCLKYTVSKYDFVVMKMDVEGTEFDLIPRLFVTGAICLVDEVFLVCQYHS 309
DF K T S DFVV+KM+ TE + L TGAIC VDE+FL C +S
Sbjct: 392 DFLAWFKETASFADFVVLKMNTSDTELKFLSELIKTGAICSVDELFLHCTGYS 444
Score = 31.6 bits (70), Expect(2) = 3e-09
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -1
Query: 259 YDPCLELVHSLRPSGVLVHQWF 194
Y C ++ SLR SGV VHQW+
Sbjct: 443 YSDCTGIIKSLRNSGVFVHQWW 464
>ref|NP_195939.1| putative protein; protein id: At5g03190.1 [Arabidopsis thaliana]
gi|11282325|pir||T48340 hypothetical protein F15A17.220
- Arabidopsis thaliana gi|7413596|emb|CAB86086.1|
putative protein [Arabidopsis thaliana]
gi|9757770|dbj|BAB08379.1| gene_id:MOK16.10~unknown
protein [Arabidopsis thaliana]
gi|27311561|gb|AAO00746.1| putative protein [Arabidopsis
thaliana]
Length = 451
Score = 44.7 bits (104), Expect(2) = 2e-06
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = -3
Query: 467 DFAQCLKYTVSKYDFVVMKMDVEGTEFDLIPRLFVTGAICLVDEVFLVCQYH 312
DF + T DFVV+KM+ E + L TG IC VDE+FL C H
Sbjct: 376 DFLAWFEETAKYADFVVLKMNTNQVEMKFLTVLLETGVICYVDELFLRCSNH 427
Score = 28.1 bits (61), Expect(2) = 2e-06
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 250 CLELVHSLRPSGVLVHQWF 194
C+ ++ +LR GV VHQW+
Sbjct: 431 CINMLQTLRARGVFVHQWW 449
>gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thaliana]
gi|26451877|dbj|BAC43031.1| unknown protein [Arabidopsis
thaliana]
Length = 420
Score = 30.8 bits (68), Expect(2) = 0.010
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 277 SKYEKTYDPCLELVHSLRPSGVLVHQWF 194
SK + Y CL L LR GV VHQW+
Sbjct: 392 SKSGRAYWECLALYGKLRDEGVAVHQWW 419
Score = 28.9 bits (63), Expect(2) = 0.010
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -3
Query: 452 LKYTVSKYDFVVMKMDVEGTEFDLIPRLFVTGAICLVDEVFLVCQ 318
LK V + ++VVMK + E ++ + + +I +VDE+FL C+
Sbjct: 340 LKENVKEEEYVVMKAEAE-----MVEEMMRSKSIKMVDELFLECK 379
>ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [Arabidopsis
thaliana] gi|25404192|pir||E96614 hypothetical protein
T18I24.4 [imported] - Arabidopsis thaliana
gi|12321385|gb|AAG50763.1|AC079131_8 hypothetical
protein [Arabidopsis thaliana]
Length = 420
Score = 30.8 bits (68), Expect(2) = 0.010
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 277 SKYEKTYDPCLELVHSLRPSGVLVHQWF 194
SK + Y CL L LR GV VHQW+
Sbjct: 392 SKSGRAYWECLALYGKLRDEGVAVHQWW 419
Score = 28.9 bits (63), Expect(2) = 0.010
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -3
Query: 452 LKYTVSKYDFVVMKMDVEGTEFDLIPRLFVTGAICLVDEVFLVCQ 318
LK V + ++VVMK + E ++ + + +I +VDE+FL C+
Sbjct: 340 LKENVKEEEYVVMKAEAE-----MVEEMMRSKSIKMVDELFLECK 379
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,298,230
Number of Sequences: 1393205
Number of extensions: 10313691
Number of successful extensions: 28513
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28490
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
