Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011444A_C01 KMC011444A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06476 ppf-1 protein - garden pea gi|2231046|emb|CAA73179.1... 211 4e-54
emb|CAC04249.1| PPF-1 protein [Pisum sativum] 206 2e-52
gb|AAM64642.1| chloroplast membrane protein ALBINO3 [Arabidopsis... 173 9e-43
ref|NP_180446.1| chloroplast membrane protein (ALBINO3)(ALB3)(OX... 173 9e-43
dbj|BAB03614.1| putative ppf-1 protein [Oryza sativa (japonica c... 150 8e-36
>pir||T06476 ppf-1 protein - garden pea gi|2231046|emb|CAA73179.1| PPF-1 protein
[Pisum sativum]
Length = 442
Score = 211 bits (537), Expect = 4e-54
Identities = 114/151 (75%), Positives = 123/151 (80%), Gaps = 2/151 (1%)
Frame = +1
Query: 55 MANTLISSPSFTGTPLPSLPRRHFPHRAARLLTTK--AFHQIPPIHSISHSLDFAGIVAR 228
MA TLISSPSF GTPLPSL R P+R RL T +FHQ+PPI S+SHS+D +GI AR
Sbjct: 1 MAKTLISSPSFLGTPLPSLHRTFSPNRT-RLFTKVQFSFHQLPPIQSVSHSVDLSGIFAR 59
Query: 229 TEGLLYTLADAAVVAVDPATTSVDAATQKNGGWFGFISEAMEYVLKVLKDGLSAVHVPYS 408
EGLLYTLADA V A A S D A QKNGGWFGFIS+ ME+VLKVLKDGLS+VHVPYS
Sbjct: 60 AEGLLYTLADATVAA--DAAASTDVAAQKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYS 117
Query: 409 YGFAIILLTVIVKAATLPLTKQQVESTLAMQ 501
YGFAIILLTVIVKAATLPLTKQQVESTLAMQ
Sbjct: 118 YGFAIILLTVIVKAATLPLTKQQVESTLAMQ 148
>emb|CAC04249.1| PPF-1 protein [Pisum sativum]
Length = 442
Score = 206 bits (523), Expect = 2e-52
Identities = 112/151 (74%), Positives = 121/151 (79%), Gaps = 2/151 (1%)
Frame = +1
Query: 55 MANTLISSPSFTGTPLPSLPRRHFPHRAARLLTTK--AFHQIPPIHSISHSLDFAGIVAR 228
MA TLISSPSF GTPLPSL R P+R RL T +FHQ+PPI S+SHS+D +GI AR
Sbjct: 1 MAKTLISSPSFLGTPLPSLHRTFSPNRT-RLFTKVQFSFHQLPPIQSVSHSVDLSGIFAR 59
Query: 229 TEGLLYTLADAAVVAVDPATTSVDAATQKNGGWFGFISEAMEYVLKVLKDGLSAVHVPYS 408
EGLLYTLADA V A A S D A QKNGGWFGFIS+ ME+VLKVLK GLS+VHVPYS
Sbjct: 60 AEGLLYTLADATVAA--DAAASTDVAAQKNGGWFGFISDGMEFVLKVLKGGLSSVHVPYS 117
Query: 409 YGFAIILLTVIVKAATLPLTKQQVESTLAMQ 501
YGFAIILLT IVKAATLPLTKQQVESTLAMQ
Sbjct: 118 YGFAIILLTGIVKAATLPLTKQQVESTLAMQ 148
>gb|AAM64642.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana]
Length = 462
Score = 173 bits (439), Expect = 9e-43
Identities = 99/170 (58%), Positives = 117/170 (68%), Gaps = 21/170 (12%)
Frame = +1
Query: 55 MANTLISSPS-FTGTPL--PSLPRRH-----------FPHRAA--RLLTTK-----AFHQ 171
MA L+SSPS F G+PL PS RH P+R+ +L TT + ++
Sbjct: 1 MARVLVSSPSSFFGSPLIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNE 60
Query: 172 IPPIHSISHSLDFAGIVARTEGLLYTLADAAVVAVDPATTSVDAATQKNGGWFGFISEAM 351
IPP H + S+D I R E LLYT+ADAAVV D T+ +A QK+GGWFGFIS+AM
Sbjct: 61 IPPFHGLDSSVDIGSIFTRAESLLYTIADAAVVGADSVVTTDSSAVQKSGGWFGFISDAM 120
Query: 352 EYVLKVLKDGLSAVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQ 501
E VLK+LKDGLSAVHVPY+YGFAIILLT+IVKAAT PLTKQQVESTLAMQ
Sbjct: 121 ELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQ 170
>ref|NP_180446.1| chloroplast membrane protein (ALBINO3)(ALB3)(OXA1p); protein id:
At2g28800.1, supported by cDNA: 31457., supported by
cDNA: gi_2209331 [Arabidopsis thaliana]
gi|25408012|pir||A84689 chloroplast membrane protein
(ALBINO3) [imported] - Arabidopsis thaliana
gi|2209332|gb|AAB61458.1| chloroplast membrane protein
ALBINO3 [Arabidopsis thaliana] gi|3927828|gb|AAC79585.1|
chloroplast membrane protein (ALBINO3) [Arabidopsis
thaliana] gi|27311661|gb|AAO00796.1| chloroplast
membrane protein (ALBINO3) [Arabidopsis thaliana]
Length = 462
Score = 173 bits (439), Expect = 9e-43
Identities = 99/170 (58%), Positives = 117/170 (68%), Gaps = 21/170 (12%)
Frame = +1
Query: 55 MANTLISSPS-FTGTPL--PSLPRRH-----------FPHRAA--RLLTTK-----AFHQ 171
MA L+SSPS F G+PL PS RH P+R+ +L TT + ++
Sbjct: 1 MARVLVSSPSSFFGSPLIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNE 60
Query: 172 IPPIHSISHSLDFAGIVARTEGLLYTLADAAVVAVDPATTSVDAATQKNGGWFGFISEAM 351
IPP H + S+D I R E LLYT+ADAAVV D T+ +A QK+GGWFGFIS+AM
Sbjct: 61 IPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDSSAVQKSGGWFGFISDAM 120
Query: 352 EYVLKVLKDGLSAVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQ 501
E VLK+LKDGLSAVHVPY+YGFAIILLT+IVKAAT PLTKQQVESTLAMQ
Sbjct: 121 ELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQ 170
>dbj|BAB03614.1| putative ppf-1 protein [Oryza sativa (japonica cultivar-group)]
Length = 409
Score = 150 bits (379), Expect = 8e-36
Identities = 90/145 (62%), Positives = 97/145 (66%), Gaps = 11/145 (7%)
Frame = +1
Query: 100 LPSLPRRHFPHRAARLLTTKAFHQIPPIHSISHSLDFAGIVARTEGLLYTLADAAVVAVD 279
LPSL RRH RA+ + H + I LD + R E LYTLADAAVVA D
Sbjct: 28 LPSL-RRHGGRRASACRVRASLHGLDSIAG----LDLHAALERAEAALYTLADAAVVAAD 82
Query: 280 PAT-----------TSVDAATQKNGGWFGFISEAMEYVLKVLKDGLSAVHVPYSYGFAII 426
A + + QKNGGWFGFISEA+E VLKVLKDGLSAVHVPYSYGFAII
Sbjct: 83 AAAGGGGGGGGGGGEAAASVAQKNGGWFGFISEALEVVLKVLKDGLSAVHVPYSYGFAII 142
Query: 427 LLTVIVKAATLPLTKQQVESTLAMQ 501
LLTVIVKAATLPLTKQQVESTLAMQ
Sbjct: 143 LLTVIVKAATLPLTKQQVESTLAMQ 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,662,678
Number of Sequences: 1393205
Number of extensions: 14449330
Number of successful extensions: 120799
Number of sequences better than 10.0: 1711
Number of HSP's better than 10.0 without gapping: 71891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108008
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
