Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011437A_C01 KMC011437A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194770.1| hypothetical protein; protein id: At4g30410.1 [... 42 0.005
ref|NP_200586.1| putative protein; protein id: At5g57780.1 [Arab... 38 0.056
dbj|BAB89478.1| OSJNBb0035I14.10 [Oryza sativa (japonica cultiva... 37 0.12
dbj|BAB25266.1| unnamed protein product [Mus musculus] 33 1.4
ref|NP_034624.1| intercellular adhesion molecule 2 [Mus musculus... 33 2.4
>ref|NP_194770.1| hypothetical protein; protein id: At4g30410.1 [Arabidopsis
thaliana] gi|25407637|pir||F85355 hypothetical protein
AT4g30410 [imported] - Arabidopsis thaliana
gi|7269942|emb|CAB79759.1| hypothetical protein
[Arabidopsis thaliana]
Length = 180
Score = 41.6 bits (96), Expect = 0.005
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -2
Query: 501 GEFM-DDVSLVEETLDYIPSLRAQVEVMRCLVSASE 397
GE M +DV L++ETLDYI SL+ QV VMR +V A+E
Sbjct: 140 GELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAAE 175
>ref|NP_200586.1| putative protein; protein id: At5g57780.1 [Arabidopsis thaliana]
gi|9758347|dbj|BAB08848.1|
emb|CAB79759.1~gene_id:MTI20.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 167
Score = 38.1 bits (87), Expect = 0.056
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 501 GEFMDDVS-LVEETLDYIPSLRAQVEVMRCLVSASELIKN 385
GE +DD L+ ETLDYI LRAQV+VMR + + +N
Sbjct: 120 GELIDDKDYLIRETLDYIVYLRAQVDVMRTVAAVDLFTRN 159
>dbj|BAB89478.1| OSJNBb0035I14.10 [Oryza sativa (japonica cultivar-group)]
Length = 174
Score = 37.0 bits (84), Expect = 0.12
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = -2
Query: 501 GEFMDDVSLVEETLDYIPSLRAQVEVMRCLVSASELIKNPP 379
GE M L++ET DYI +LRAQV VMR L + +PP
Sbjct: 122 GEAMAVERLLDETADYIAALRAQVGVMRALACLLSGLGSPP 162
>dbj|BAB25266.1| unnamed protein product [Mus musculus]
Length = 277
Score = 33.5 bits (75), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (52%)
Frame = -1
Query: 250 VVFSFLYYMFYLYVLICFVLFINFHSLHTSLFGS*K*WRKRSRRS 116
VV S L ++F VL+CF+ ++H T +G WR+ R S
Sbjct: 228 VVVSILLFLFVTSVLLCFIFGQHWHRRRTGTYGVLAAWRRLPRAS 272
>ref|NP_034624.1| intercellular adhesion molecule 2 [Mus musculus]
gi|462381|sp|P35330|ICA2_MOUSE Intercellular adhesion
molecule-2 precursor (ICAM-2) (CD102) (Lymphocyte
function-associated AG-1 counter-receptor)
gi|346872|pir||A46510 intercellular adhesion molecule 2
- mouse gi|51512|emb|CAA46474.1| ICAM-2 [Mus musculus]
gi|817964|emb|CAA46473.1| intercellular adhesion
molecule-2 [Mus musculus] gi|24657500|gb|AAH39128.1|
intercellular adhesion molecule 2 [Mus musculus]
gi|25059020|gb|AAH39970.1| intercellular adhesion
molecule 2 [Mus musculus]
Length = 277
Score = 32.7 bits (73), Expect = 2.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 250 VVFSFLYYMFYLYVLICFVLFINFHSLHTSLFGS*K*WRKRSRRSYTYTSRP 95
VV S L ++F VL+CF+ ++H T +G WR+ R + +RP
Sbjct: 228 VVVSILLFLFVTSVLLCFIFGQHWHRRRTGTYGVLAAWRRLPR---AFRARP 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,402,064
Number of Sequences: 1393205
Number of extensions: 9055306
Number of successful extensions: 23112
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23065
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
