Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011418A_C01 KMC011418A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189991.1| kinesin-related protein; protein id: At3g44050.... 59 7e-08
ref|NP_506070.1| RADiation sensitivity abnormal/yeast RAD-relate... 35 0.82
ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [... 34 1.8
ref|NP_702312.1| Ser/Thr protein kinase, putative [Plasmodium fa... 34 1.8
ref|XP_287807.1| hypothetical protein XP_287807 [Mus musculus] 33 3.1
>ref|NP_189991.1| kinesin-related protein; protein id: At3g44050.1 [Arabidopsis
thaliana] gi|11358477|pir||T48959 kinesin-like protein -
Arabidopsis thaliana gi|7594566|emb|CAB88133.1|
kinesin-like protein [Arabidopsis thaliana]
Length = 1229
Score = 58.5 bits (140), Expect = 7e-08
Identities = 37/103 (35%), Positives = 63/103 (60%), Gaps = 1/103 (0%)
Frame = -2
Query: 631 EMLLEFRDDGMFEIEHMIIELPQYVFEHDLKEAEMKILGEELQIDFVRAEELQTAKGIAA 452
+ + E + GM EI++MIIE+ Q VFE DL++ E I+ EEL + +RA+++ T +
Sbjct: 1130 QTIQEMEEQGMSEIQNMIIEIHQLVFESDLRKEEAMIIREELIAEELRAKDVHT--NMIE 1187
Query: 451 NIRNNLFS-SMSCSSMFEKIEEQMQNLRASIVETKSLLEGISH 326
+ N L + +S+ KIEE+++N+ + + E LLE +SH
Sbjct: 1188 RVENALKTLENQNNSVSGKIEEEVENVLSLVHEASRLLE-VSH 1229
>ref|NP_506070.1| RADiation sensitivity abnormal/yeast RAD-related RAD-50, DNA repair
protein rad50 like (150.4 kD) (rad-50) [Caenorhabditis
elegans] gi|7507111|pir||T24480 hypothetical protein
T04H1.4 - Caenorhabditis elegans
gi|2687855|emb|CAA99730.1| RAD50 homologue ceRAD50
[Caenorhabditis elegans] gi|4008379|emb|CAB01581.1| C.
elegans RAD-50 protein (corresponding sequence T04H1.4)
[Caenorhabditis elegans]
Length = 1298
Score = 35.0 bits (79), Expect = 0.82
Identities = 20/78 (25%), Positives = 44/78 (55%), Gaps = 1/78 (1%)
Frame = -2
Query: 559 VFEHDLKEAEMKILG-EELQIDFVRAEELQTAKGIAANIRNNLFSSMSCSSMFEKIEEQM 383
+ E DL++ ++ + E +Q + + EE TA+ + + N+F + SC + E++ E++
Sbjct: 574 IMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQEL--KLSENIFEACSCEA--EEVSEKL 629
Query: 382 QNLRASIVETKSLLEGIS 329
+NLR + + + L +S
Sbjct: 630 ENLRKRLKKARKDLAPLS 647
>ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [Arabidopsis thaliana]
Length = 1212
Score = 33.9 bits (76), Expect = 1.8
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = -2
Query: 574 ELPQYVFEHD-LKEAEMKILGEELQIDFVRAEELQTAKGIAANIRNNLFSSMSCSSMFEK 398
EL VFE++ LK E L ++ V+ K + + N +S F+K
Sbjct: 890 ELQDVVFENEKLKSKEALSLKTTEELSDVKQTLADKEKELKTAVVENEKLKAQAASSFQK 949
Query: 397 IEEQMQNLRASIVETKSLLEGISHA 323
IEE ++NL+ S+++ ++ LEG+ A
Sbjct: 950 IEE-LKNLKQSLLDKENELEGVFQA 973
>ref|NP_702312.1| Ser/Thr protein kinase, putative [Plasmodium falciparum 3D7]
gi|23497494|gb|AAN37036.1|AE014823_16 Ser/Thr protein
kinase, putative [Plasmodium falciparum 3D7]
Length = 1558
Score = 33.9 bits (76), Expect = 1.8
Identities = 18/55 (32%), Positives = 32/55 (57%)
Frame = -2
Query: 547 DLKEAEMKILGEELQIDFVRAEELQTAKGIAANIRNNLFSSMSCSSMFEKIEEQM 383
D K+ I+ E+++ D+++ E +K I N NN+ S+S S+ E+I EQ+
Sbjct: 276 DKKDRANNIISEQMKEDYIKNVEEVLSKHINNNKNNNVEDSVSLYSLDEEISEQI 330
>ref|XP_287807.1| hypothetical protein XP_287807 [Mus musculus]
Length = 120
Score = 33.1 bits (74), Expect = 3.1
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 6/60 (10%)
Frame = -3
Query: 231 PLSFLTFLYAEKNIQLFPTSISPLVFYLSKVLIC-CI-----PQLKVVYLLILCL*LLLF 70
PL + TFL+ LF + SPL+F S + +C C+ + ++ +L ILC +L+F
Sbjct: 40 PLRYFTFLFFSFLRLLFNYNTSPLLFLPSNMCVCMCVYIFLSTRFQIHWLFILCYFVLIF 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,990,150
Number of Sequences: 1393205
Number of extensions: 11103983
Number of successful extensions: 28960
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28957
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
