Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011411A_C01 KMC011411A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51820 F-actin capping protein alpha chain [imported] - Ara... 196 1e-49
dbj|BAC20863.1| putative alpha subunit of F-actin capping protei... 196 1e-49
ref|NP_187203.1| alpha subunit of F-actin capping protein; prote... 195 3e-49
ref|NP_031630.1| capping protein (actin filament) muscle Z-line,... 98 5e-20
ref|NP_006127.1| capping protein (actin filament) muscle Z-line,... 98 7e-20
>pir||T51820 F-actin capping protein alpha chain [imported] - Arabidopsis
thaliana gi|3702368|emb|CAA05054.1| alpha subunit of
F-actin capping protein [Arabidopsis thaliana]
Length = 308
Score = 196 bits (498), Expect = 1e-49
Identities = 91/148 (61%), Positives = 119/148 (79%)
Frame = +3
Query: 72 RRVEIGKWFLLNSPPGEIQYVAKDVKSILNNDD*FNEAATEAFPVYNLTHLISLQLPNRT 251
++ EI KWF LN+P GEI YVAKD+K++L++++ +NEAA EAFPVYN TH+I L++P+
Sbjct: 17 QKKEIAKWFFLNAPAGEINYVAKDLKAVLSDEEVYNEAAMEAFPVYNKTHMICLEMPSGA 76
Query: 252 GDVLVTSLGELEGNAFLDPRTAQVAVVDHVKQVGTDVRPAADEELPSPYIEEFRCSLDAE 431
GDV+V+S E+ N +LDPRTAQVA+VDHVKQ+ T VRPA DEELPS YIEE+R +LDAE
Sbjct: 77 GDVIVSSYSEINENEYLDPRTAQVAIVDHVKQICTKVRPANDEELPSLYIEEYRYALDAE 136
Query: 432 ILKYVEEAYPEGVCSVYCGNGNDVEGPG 515
I +YV E+YP+G+ +V C G D EGPG
Sbjct: 137 IQRYVSESYPKGMSAVNCVKGKDTEGPG 164
>dbj|BAC20863.1| putative alpha subunit of F-actin capping protein [Oryza sativa
(japonica cultivar-group)]
Length = 297
Score = 196 bits (498), Expect = 1e-49
Identities = 89/145 (61%), Positives = 117/145 (80%)
Frame = +3
Query: 81 EIGKWFLLNSPPGEIQYVAKDVKSILNNDD*FNEAATEAFPVYNLTHLISLQLPNRTGDV 260
EI WFL N+P GEI YVAKDV+++L ++ + AA EAFP +N HL++L+LP+R+GD+
Sbjct: 9 EIAVWFLSNAPAGEIHYVAKDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDI 68
Query: 261 LVTSLGELEGNAFLDPRTAQVAVVDHVKQVGTDVRPAADEELPSPYIEEFRCSLDAEILK 440
++T+ GEL+ N +LDPRTAQVA VDH+KQ T +RPAADEELPS YIE+FR +LD E+ K
Sbjct: 69 IITTYGELDKNNYLDPRTAQVATVDHIKQKCTKLRPAADEELPSAYIEDFRSALDVELSK 128
Query: 441 YVEEAYPEGVCSVYCGNGNDVEGPG 515
YV EAYP+GVC+VYC +G D+EGPG
Sbjct: 129 YVGEAYPKGVCAVYCTSGKDIEGPG 153
>ref|NP_187203.1| alpha subunit of F-actin capping protein; protein id: At3g05520.1,
supported by cDNA: 33531. [Arabidopsis thaliana]
gi|20141194|sp|O82631|CAPA_ARATH F-actin capping protein
alpha subunit (CapZ-alpha) gi|7596760|gb|AAF64531.1|
alpha subunit of F-actin capping protein [Arabidopsis
thaliana] gi|26451232|dbj|BAC42718.1| putative alpha
subunit of F-actin capping protein [Arabidopsis
thaliana]
Length = 308
Score = 195 bits (495), Expect = 3e-49
Identities = 91/148 (61%), Positives = 119/148 (79%)
Frame = +3
Query: 72 RRVEIGKWFLLNSPPGEIQYVAKDVKSILNNDD*FNEAATEAFPVYNLTHLISLQLPNRT 251
++ EI KWF LN+P GEI YVAKD+K++L++++ +NEAA EAFPVYN TH+I L++P+
Sbjct: 17 QKKEIAKWFFLNAPAGEINYVAKDLKAVLSDEEVYNEAAMEAFPVYNKTHMICLEMPSGA 76
Query: 252 GDVLVTSLGELEGNAFLDPRTAQVAVVDHVKQVGTDVRPAADEELPSPYIEEFRCSLDAE 431
GDV+V+S E+ N +LDPRTAQVA+VDHVKQ+ T VRPA DEELPS YIEE+R +LDAE
Sbjct: 77 GDVIVSSYSEINENEYLDPRTAQVAIVDHVKQICTKVRPANDEELPSLYIEEYRYALDAE 136
Query: 432 ILKYVEEAYPEGVCSVYCGNGNDVEGPG 515
I +YV E+YP+G+ +V C G D EGPG
Sbjct: 137 IQRYVSESYPKGMSAVNCVKGKDNEGPG 164
>ref|NP_031630.1| capping protein (actin filament) muscle Z-line, alpha 2; capping
protein alpha 2 [Mus musculus]
gi|1345696|sp|P47754|CAZ2_MOUSE F-actin capping protein
alpha-2 subunit (CAPZ alpha-2) gi|595919|gb|AAC00567.1|
capping protein alpha 2 subunit [Mus musculus]
Length = 286
Score = 98.2 bits (243), Expect = 5e-20
Identities = 54/145 (37%), Positives = 78/145 (53%)
Frame = +3
Query: 75 RVEIGKWFLLNSPPGEIQYVAKDVKSILNNDD*FNEAATEAFPVYNLTHLISLQLPNRTG 254
+V I F++++PPGE V DV+ +LNND+ E A AF YNL +++
Sbjct: 13 KVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLDQFTPVKIEGYED 72
Query: 255 DVLVTSLGELEGNAFLDPRTAQVAVVDHVKQVGTDVRPAADEELPSPYIEEFRCSLDAEI 434
VL+T G+L FLDP+ DH+++ TD RP E IE +R S++ +
Sbjct: 73 QVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENA----IESWRTSVETAL 128
Query: 435 LKYVEEAYPEGVCSVYCGNGNDVEG 509
YV+E YP GVC+VY G V+G
Sbjct: 129 RAYVKEHYPNGVCTVY---GKKVDG 150
>ref|NP_006127.1| capping protein (actin filament) muscle Z-line, alpha 2; F-actin
capping protein alpha-2 subunit [Homo sapiens]
gi|1345695|sp|P47755|CAZ2_HUMAN F-actin capping protein
alpha-2 subunit (CapZ alpha-2) gi|595255|gb|AAA88848.1|
actin capping protein alpha subunit
gi|2393732|gb|AAC60382.1| f-actin capping protein
alpha-2 subunit [Homo sapiens]
gi|13529131|gb|AAH05338.1|AAH05338 capping protein
(actin filament) muscle Z-line, alpha 2 [Homo sapiens]
Length = 286
Score = 97.8 bits (242), Expect = 7e-20
Identities = 52/145 (35%), Positives = 78/145 (52%)
Frame = +3
Query: 75 RVEIGKWFLLNSPPGEIQYVAKDVKSILNNDD*FNEAATEAFPVYNLTHLISLQLPNRTG 254
+V I F++++PPGE V DV+ +LNND+ E A AF YNL +++
Sbjct: 13 KVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLDQFTPVKIEGYED 72
Query: 255 DVLVTSLGELEGNAFLDPRTAQVAVVDHVKQVGTDVRPAADEELPSPYIEEFRCSLDAEI 434
VL+T G+L FLDP+ DH+++ TD RP E +E +R S++ +
Sbjct: 73 QVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEVENA----VESWRTSVETAL 128
Query: 435 LKYVEEAYPEGVCSVYCGNGNDVEG 509
YV+E YP GVC+VY G ++G
Sbjct: 129 RAYVKEHYPNGVCTVY---GKKIDG 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,624,938
Number of Sequences: 1393205
Number of extensions: 11769327
Number of successful extensions: 54499
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 42015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51244
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
