Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011403A_C01 KMC011403A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA06523.1| cp33 [Arabidopsis thaliana] 115 3e-25
ref|NP_190806.1| chloroplast RNA-binding protein cp33; protein i... 115 3e-25
gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis ... 114 5e-25
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast precu... 113 2e-24
pir||S77714 RNA-binding protein precursor, 33K - wood tobacco gi... 112 2e-24
>dbj|BAA06523.1| cp33 [Arabidopsis thaliana]
Length = 321
Score = 115 bits (288), Expect = 3e-25
Identities = 58/102 (56%), Positives = 82/102 (79%), Gaps = 4/102 (3%)
Frame = -2
Query: 522 GWRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 343
GW ++SQ LKD F +QPG++ AKVIYER+ GRSRGFGF++FE+A++V++AL TMNGVEV+
Sbjct: 219 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 278
Query: 342 GRELRLNLAAVK---APSSPSVTE-ENEGSSVDTSELVSSAS 229
GR LRLNLA+ + S PSV E E E +S++++E++S+ S
Sbjct: 279 GRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVS 320
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/97 (27%), Positives = 51/97 (51%), Gaps = 4/97 (4%)
Frame = -2
Query: 519 WRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 340
+ ++S +L +F E +V +++Y++ RSRGFGFVT + ++ + A++ N ++ G
Sbjct: 117 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGG 176
Query: 339 RELRLNLAAVKAPSSPSV----TEENEGSSVDTSELV 241
R +++N V V +N S VD+ V
Sbjct: 177 RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 213
>ref|NP_190806.1| chloroplast RNA-binding protein cp33; protein id: At3g52380.1,
supported by cDNA: 14246., supported by cDNA:
gi_14517543, supported by cDNA: gi_17064757, supported
by cDNA: gi_18700225 [Arabidopsis thaliana]
gi|1076308|pir||S53494 RNA-binding protein cp33
precursor - Arabidopsis thaliana
gi|681910|dbj|BAA06522.1| cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33
precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240
[Arabidopsis thaliana] gi|18700226|gb|AAL77723.1|
AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33
[Arabidopsis thaliana]
Length = 329
Score = 115 bits (288), Expect = 3e-25
Identities = 58/102 (56%), Positives = 82/102 (79%), Gaps = 4/102 (3%)
Frame = -2
Query: 522 GWRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 343
GW ++SQ LKD F +QPG++ AKVIYER+ GRSRGFGF++FE+A++V++AL TMNGVEV+
Sbjct: 227 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 342 GRELRLNLAAVK---APSSPSVTE-ENEGSSVDTSELVSSAS 229
GR LRLNLA+ + S PSV E E E +S++++E++S+ S
Sbjct: 287 GRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVS 328
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/97 (27%), Positives = 51/97 (51%), Gaps = 4/97 (4%)
Frame = -2
Query: 519 WRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 340
+ ++S +L +F E +V +++Y++ RSRGFGFVT + ++ + A++ N ++ G
Sbjct: 125 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGG 184
Query: 339 RELRLNLAAVKAPSSPSV----TEENEGSSVDTSELV 241
R +++N V V +N S VD+ V
Sbjct: 185 RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221
>gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 114 bits (286), Expect = 5e-25
Identities = 58/102 (56%), Positives = 82/102 (79%), Gaps = 4/102 (3%)
Frame = -2
Query: 522 GWRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 343
GW ++SQ LKD F +QPG++ AKVIYER+ GRSRGFGF++FE+A++V++AL TMNGVEV+
Sbjct: 227 GWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 342 GRELRLNLAAVK---APSSPSVTE-ENEGSSVDTSELVSSAS 229
GR LRLNLA+ + S PSV E E E +S++++E++S+ S
Sbjct: 287 GRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVS 328
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/97 (27%), Positives = 51/97 (51%), Gaps = 4/97 (4%)
Frame = -2
Query: 519 WRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 340
+ ++S +L +F E +V +++Y++ RSRGFGFVT + ++ + A++ N ++ G
Sbjct: 125 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQMFNSSQIGG 184
Query: 339 RELRLNLAAVKAPSSPSV----TEENEGSSVDTSELV 241
R +++N V V +N S VD+ V
Sbjct: 185 RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor
- common tobacco gi|20005|emb|CAA37879.1| 33 kDa
ribonucleoprotein precursor [Nicotiana tabacum]
Length = 324
Score = 113 bits (282), Expect = 2e-24
Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = -2
Query: 519 WRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 340
W ++SQ L+D FA+QPG +SAKVIY+R GRSRGFGF+TF +A+ + +AL TMN VE++G
Sbjct: 226 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEG 285
Query: 339 RELRLNLAAVKAP-SSPSVTEENEGSSVDTSELVSSAST 226
R LRLN+A KAP SSP V E + + D SEL+SS S+
Sbjct: 286 RPLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSSLSS 324
Score = 52.8 bits (125), Expect = 2e-06
Identities = 22/68 (32%), Positives = 43/68 (62%)
Frame = -2
Query: 513 VSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 334
++S L ++FAE + + +++Y+R RSRGF FVT + ++ + A++ +G +V GR
Sbjct: 125 MTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRT 184
Query: 333 LRLNLAAV 310
+++N V
Sbjct: 185 VKVNFPEV 192
>pir||S77714 RNA-binding protein precursor, 33K - wood tobacco
gi|311952|emb|CAA41253.1| 33 kd chloroplast
ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 112 bits (281), Expect = 2e-24
Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Frame = -2
Query: 519 WRVSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 340
W ++SQ L+D FA+QPG +SAKVIY+R GRSRGFGF+TF +A+ +++AL TMN VE++G
Sbjct: 221 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEG 280
Query: 339 RELRLNLAAVKAP-SSPSVTEENEGSSVDTSELVSSAST 226
R LRLN+A KAP SSPSV E + + + +EL+SS S+
Sbjct: 281 RPLRLNVAGQKAPLSSPSVVETSPENDSENNELLSSLSS 319
Score = 52.8 bits (125), Expect = 2e-06
Identities = 22/68 (32%), Positives = 43/68 (62%)
Frame = -2
Query: 513 VSSQDLKDVFAEQPGLVSAKVIYERDRGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 334
++S L ++FAE + + +++Y+R RSRGF FVT + ++ + A++ +G +V GR
Sbjct: 120 MTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRT 179
Query: 333 LRLNLAAV 310
+++N V
Sbjct: 180 VKVNFPEV 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,936,467
Number of Sequences: 1393205
Number of extensions: 8991947
Number of successful extensions: 24617
Number of sequences better than 10.0: 1831
Number of HSP's better than 10.0 without gapping: 22852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24564
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
