Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011398A_C01 KMC011398A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64482.1| unknown [Arabidopsis thaliana] 94 1e-18
ref|NP_191822.1| putative protein; protein id: At3g62630.1, supp... 94 1e-18
dbj|BAC65723.1| mKIAA1096 protein [Mus musculus] 47 2e-04
ref|NP_611824.1| CG12491-PA [Drosophila melanogaster] gi|7291633... 46 3e-04
ref|NP_198672.1| putative protein; protein id: At5g38560.1, supp... 40 4e-04
>gb|AAM64482.1| unknown [Arabidopsis thaliana]
Length = 380
Score = 94.0 bits (232), Expect = 1e-18
Identities = 60/134 (44%), Positives = 82/134 (60%), Gaps = 15/134 (11%)
Frame = +3
Query: 168 PSPASSTAPPPGPLHFAITAAASSSSSFQNP--FSSTSSSEFEVLCPVRLCTGFGAPG-- 335
P P + P P+HF + +A+SSS +NP ++S +FE RL + G G
Sbjct: 42 PPPGYFFSAPSSPMHFFLCSASSSS---ENPKKLDTSSCGDFEFDFSSRLSSSSGPLGGV 98
Query: 336 SMSSADELFWNGQIRPMKLPTHLERPQ----LLDLEEEEGEEETEV-------RGRDWRL 482
SM+SA+ELF NGQI+PMKL +HL+RPQ LLDLE EE +++ E RGRD +L
Sbjct: 99 SMTSAEELFSNGQIKPMKLSSHLQRPQILSPLLDLENEEEDDDDETKPNGEMKRGRDLKL 158
Query: 483 RAKSGRRRTRSLSP 524
R++S R+ RSLSP
Sbjct: 159 RSRSVHRKARSLSP 172
Score = 47.0 bits (110), Expect = 1e-04
Identities = 26/57 (45%), Positives = 36/57 (62%), Gaps = 2/57 (3%)
Frame = +2
Query: 35 MELQSGTNNGETQTSNL--EYIDDSTCSTPYVSAPSSPGRRGGGEPPISGFFYSAPT 199
M+L ++G+ T ++ S CSTP+VSAPSSPGR G PP G+F+SAP+
Sbjct: 1 MDLVESFSHGDPDTPRFSDDFGSGSACSTPFVSAPSSPGR---GPPP--GYFFSAPS 52
>ref|NP_191822.1| putative protein; protein id: At3g62630.1, supported by cDNA: 2947.
[Arabidopsis thaliana] gi|11357681|pir||T48052
hypothetical protein F26K9.60 - Arabidopsis thaliana
gi|7362743|emb|CAB83113.1| putative protein [Arabidopsis
thaliana] gi|28392868|gb|AAO41871.1| unknown protein
[Arabidopsis thaliana] gi|28827650|gb|AAO50669.1|
unknown protein [Arabidopsis thaliana]
Length = 380
Score = 94.0 bits (232), Expect = 1e-18
Identities = 60/134 (44%), Positives = 82/134 (60%), Gaps = 15/134 (11%)
Frame = +3
Query: 168 PSPASSTAPPPGPLHFAITAAASSSSSFQNP--FSSTSSSEFEVLCPVRLCTGFGAPG-- 335
P P + P P+HF + +A+SSS +NP ++S +FE RL + G G
Sbjct: 42 PPPGYFFSAPSSPMHFFLCSASSSS---ENPKKLDTSSCGDFEFDFSSRLSSSSGPLGGV 98
Query: 336 SMSSADELFWNGQIRPMKLPTHLERPQ----LLDLEEEEGEEETEV-------RGRDWRL 482
SM+SA+ELF NGQI+PMKL +HL+RPQ LLDLE EE +++ E RGRD +L
Sbjct: 99 SMTSAEELFSNGQIKPMKLSSHLQRPQILSPLLDLENEEEDDDDETKPNGEMKRGRDLKL 158
Query: 483 RAKSGRRRTRSLSP 524
R++S R+ RSLSP
Sbjct: 159 RSRSVHRKARSLSP 172
Score = 47.0 bits (110), Expect = 1e-04
Identities = 26/57 (45%), Positives = 36/57 (62%), Gaps = 2/57 (3%)
Frame = +2
Query: 35 MELQSGTNNGETQTSNL--EYIDDSTCSTPYVSAPSSPGRRGGGEPPISGFFYSAPT 199
M+L ++G+ T ++ S CSTP+VSAPSSPGR G PP G+F+SAP+
Sbjct: 1 MDLVESFSHGDPDTPRFSDDFGSGSACSTPFVSAPSSPGR---GPPP--GYFFSAPS 52
>dbj|BAC65723.1| mKIAA1096 protein [Mus musculus]
Length = 1153
Score = 46.6 bits (109), Expect = 2e-04
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +3
Query: 21 SSSSTWSFNLAPTMAKPKPLTSNTSTTARAPLLTSAPLPAPAAA---AEVNHPSPASSTA 191
SS T S + P++ P P+ ++ STT P+LTSA +P A+A A V+ P+P S
Sbjct: 879 SSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSAT 938
Query: 192 PPPGPLHFAITAAASSSSSFQNPFSSTSS 278
P A+ A+A ++S P S+ S+
Sbjct: 939 AVPSISTPAVPASAPTASVPLAPASAAST 967
Score = 38.9 bits (89), Expect = 0.037
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 51 APTMAKPKPLTSNTSTTARAPLLTSAPLPAPAAAAEVNHPSPASSTAPPPGPLHFAITAA 230
A + P P+ S TA P+ T AP+ A P P S++AP P +TA+
Sbjct: 831 AAPASTPAPVPILASATALVPVSTPAPVLTSCPA-----PVPTSASAPVPASTSSPVTAS 885
Query: 231 ASSSSSFQNPFSSTSSSEFEVLCPV 305
+SS S P +S+ V P+
Sbjct: 886 SSSQPSVPAPTPVLASASTTVSVPI 910
Score = 33.5 bits (75), Expect = 1.6
Identities = 29/83 (34%), Positives = 43/83 (50%), Gaps = 15/83 (18%)
Frame = +3
Query: 99 TARAPLLTSAP-LPAPAAAAEVNHPSP----ASSTAPPP----------GPLHFAITAAA 233
+A P+ +SAP L APAAAA + P+P AS+TA P P +A+A
Sbjct: 813 SAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASA 872
Query: 234 SSSSSFQNPFSSTSSSEFEVLCP 302
+S +P +++SSS+ V P
Sbjct: 873 PVPASTSSPVTASSSSQPSVPAP 895
>ref|NP_611824.1| CG12491-PA [Drosophila melanogaster] gi|7291633|gb|AAF47056.1|
CG12491-PA [Drosophila melanogaster]
Length = 157
Score = 45.8 bits (107), Expect = 3e-04
Identities = 30/88 (34%), Positives = 44/88 (49%)
Frame = +3
Query: 21 SSSSTWSFNLAPTMAKPKPLTSNTSTTARAPLLTSAPLPAPAAAAEVNHPSPASSTAPPP 200
SSSS S + +PT P TS++S+T + TS P + + PS +SST+P
Sbjct: 24 SSSSDSSSSTSPTSNSSTPSTSSSSSTPSSSSSTSTPSSNSTTSTSSSTPSSSSSTSPTS 83
Query: 201 GPLHFAITAAASSSSSFQNPFSSTSSSE 284
T A S+SS + S++S SE
Sbjct: 84 STSSTTATTTAPSTSSDTSSSSTSSDSE 111
>ref|NP_198672.1| putative protein; protein id: At5g38560.1, supported by cDNA:
gi_15983496, supported by cDNA: gi_18700152 [Arabidopsis
thaliana] gi|10176824|dbj|BAB10146.1| contains
similarity to protein kinase~gene_id:MBB18.10
[Arabidopsis thaliana]
gi|15983497|gb|AAL11616.1|AF424623_1 AT5g38560/MBB18_10
[Arabidopsis thaliana] gi|18700153|gb|AAL77688.1|
AT5g38560/MBB18_10 [Arabidopsis thaliana]
gi|21360463|gb|AAM47347.1| AT5g38560/MBB18_10
[Arabidopsis thaliana]
Length = 681
Score = 39.7 bits (91), Expect = 0.022
Identities = 28/85 (32%), Positives = 39/85 (44%), Gaps = 8/85 (9%)
Frame = +3
Query: 54 PTMAKPKPLTSNTSTTARAPLLTSAPLPAPAAAAEVNHPSPASSTAPPPGPLHFA----- 218
P+ KP P T +TT P P PA +A+ ++P+ S+ APPP PL
Sbjct: 153 PSPPKPSPSTPTPTTTTSPP-----PPPATSASPPSSNPTDPSTLAPPPTPLPVVPREKP 207
Query: 219 ---ITAAASSSSSFQNPFSSTSSSE 284
T AS++ + P SS SE
Sbjct: 208 IAKPTGPASNNGNNTLPSSSPGKSE 232
Score = 37.4 bits (85), Expect(3) = 4e-04
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 45 NLAPTMAKPKPLTSNTSTTARAPLLT-----SAPLPAPAAAAEVNHPSPASSTAPPP 200
+L P + P +SN+STTA PL T SAP P + P P S++PPP
Sbjct: 2 SLVPPLPILSPPSSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPP 58
Score = 24.3 bits (51), Expect(3) = 4e-04
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 371 PDPTHEAPDPPGASPT 418
P P E P PPG +P+
Sbjct: 139 PSPPGETPSPPGETPS 154
Score = 21.9 bits (45), Expect(3) = 4e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 181 LLQRPHQVHCTSP*PPLLPPPPPSRTP 261
++ P +SP PP++ PP TP
Sbjct: 76 VITSPPPTVASSPPPPVVIASPPPSTP 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,086,639
Number of Sequences: 1393205
Number of extensions: 17278517
Number of successful extensions: 211443
Number of sequences better than 10.0: 2097
Number of HSP's better than 10.0 without gapping: 104561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182493
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
