Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011389A_C01 KMC011389A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7... 40 0.022
ref|NP_701499.1| Bi-functional aminoacyl-tRNA synthetase, putati... 39 0.029
gb|AAO52249.1| similar to Plasmodium falciparum (isolate 3D7). H... 38 0.084
ref|XP_230097.1| similar to olfactory receptor MOR185-2 [Mus mus... 38 0.084
ref|XP_141080.1| similar to Olfactory receptor 8B8 (Olfactory re... 38 0.084
>ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496006|gb|AAN35668.1|AE014837_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1477
Score = 39.7 bits (91), Expect = 0.022
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = +2
Query: 11 IYIYIYTCLQYSYSYSSILIFLQKVKEILNIIDETKAREQSSR**AQKNKRAGKQQKKNN 190
++ Y++ C++Y + Y S FLQ+ K +L+I + K ++ ++ N NN
Sbjct: 916 LFSYLH-CIKYKHVYIST--FLQRYKTLLHITQQEKIKKTNN---INNNNNINHNNINNN 969
Query: 191 NNKHTDTNTTNINNS 235
N H + N NINN+
Sbjct: 970 NINHNNINHNNINNN 984
>ref|NP_701499.1| Bi-functional aminoacyl-tRNA synthetase, putative [Plasmodium
falciparum 3D7] gi|23496667|gb|AAN36223.1|AE014846_22
Bi-functional aminoacyl-tRNA synthetase, putative
[Plasmodium falciparum 3D7]
Length = 746
Score = 39.3 bits (90), Expect = 0.029
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Frame = +2
Query: 47 YSYSSILIFLQKV----------KEILNIIDETKAREQSSR**AQKNKRAGKQQKKNNNN 196
++YSS+ I Q V E + I ++T ++ + + + + A ++ +NNNN
Sbjct: 148 HNYSSLYIKTQDVIKFCESFNHAPEYVQIKEDTTSKARVDKKEDVQEEMAKNEELQNNNN 207
Query: 197 KHTDTNTTNINNSAGTKARKASSLKGEASMHNEARAQESRDDS 325
+ + + +N NN+ K + LKG+ +NE +S+D +
Sbjct: 208 NNKNNSNSNNNNNNNNNHIKDTILKGKLLSNNEVEDNKSKDSN 250
>gb|AAO52249.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 1404
Score = 37.7 bits (86), Expect = 0.084
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 170 KQQKKNNNNKHTDTNTTNINNSAGTKARKASSLKGEASMHN 292
++QK+NNNN + + N N NN+ K +K SS S +N
Sbjct: 517 EEQKENNNNNNNNNNNNNNNNNNNNKKKKKSSSNSNGSKNN 557
Score = 31.2 bits (69), Expect = 7.9
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = +2
Query: 149 QKNKRAGKQQKKNNNNKHTDTNTTNINNSAGTKARKASSLKGEASMHN 292
+K +++ NNNN + + N N NN+ K + +S+ G + N
Sbjct: 512 EKGDEEEQKENNNNNNNNNNNNNNNNNNNNKKKKKSSSNSNGSKNNSN 559
>ref|XP_230097.1| similar to olfactory receptor MOR185-2 [Mus musculus] [Rattus
norvegicus]
Length = 315
Score = 37.7 bits (86), Expect = 0.084
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Frame = -2
Query: 267 RLEAFLAFVPAELLMLVV-----FVSVCLLLLFFFCC-------FPALLFFWAH*RELCS 124
+L FL F+ AE+ ML V +V++C LL+ +L +F+ C+
Sbjct: 100 QLGGFLVFIVAEIFMLAVMAYDRYVAICNPLLYMVVVSRRVCLLLMSLTYFYG----FCT 155
Query: 123 LAFVSSIIFNISFTFCKKINILEYEYEYCKQV 28
VSS +F++S+ KKIN + YC V
Sbjct: 156 AIVVSSCVFSVSYCSSKKIN-----HFYCDNV 182
>ref|XP_141080.1| similar to Olfactory receptor 8B8 (Olfactory receptor TPCR85) [Mus
musculus]
Length = 315
Score = 37.7 bits (86), Expect = 0.084
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Frame = -2
Query: 267 RLEAFLAFVPAELLMLVV-----FVSVCLLLLFFFCC-------FPALLFFWAH*RELCS 124
+L FL F+ AE+ ML V +V++C LL+ +L +F+ C+
Sbjct: 100 QLGGFLVFIVAEIFMLAVMAYDRYVAICNPLLYMVVVSRRVCLLLVSLTYFYG----FCT 155
Query: 123 LAFVSSIIFNISFTFCKKINILEYEYEYCKQV 28
VSS +F++S+ KKIN + YC V
Sbjct: 156 AIVVSSCVFSVSYCSSKKIN-----HFYCDNV 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,152,096
Number of Sequences: 1393205
Number of extensions: 10095417
Number of successful extensions: 91139
Number of sequences better than 10.0: 297
Number of HSP's better than 10.0 without gapping: 38396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62726
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
