Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011386A_C01 KMC011386A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_770990.1| blr4350 [Bradyrhizobium japonicum] gi|27352613|... 35 0.72
gb|AAC33347.1| putative zinc finger protein [Emericella nidulans] 33 3.6
gb|EAA17417.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.1
ref|XP_229945.1| similar to ADP-ribosylation factor 4 [Rattus no... 32 6.1
ref|NP_001512.1| general transcription factor IIIC, polypeptide ... 32 6.1
>ref|NP_770990.1| blr4350 [Bradyrhizobium japonicum] gi|27352613|dbj|BAC49615.1|
blr4350 [Bradyrhizobium japonicum USDA 110]
Length = 522
Score = 35.0 bits (79), Expect = 0.72
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 74 DPPLPFVLATYPKVSSPRAPRRRQRNQPACCGGGGFFFHNKTWTII-----PTLG 223
DPP P LA P VS PR P+ N P F HN W+++ PTLG
Sbjct: 295 DPP-PQKLAALPPVSVPRVPKEETTNAPI----ASFSRHNGGWSVVFSFADPTLG 344
>gb|AAC33347.1| putative zinc finger protein [Emericella nidulans]
Length = 354
Score = 32.7 bits (73), Expect = 3.6
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 218 LGSLRVYVHPWLEFPFDFSLVAVTRIRASVSTPPKLT*R-GIHSREQTQPLHTPRSTPSC 394
+G VY HP P FS T +S STPP GI E ++P H P P
Sbjct: 16 MGFDSVYQHPHHSQPPQFSDPWTTAHSSSHSTPPVYPASVGIKQDETSRPSHIP--MPYS 73
Query: 395 ISIQDPSRQVEVLRGTHYS 451
+S+ PS ++ G++YS
Sbjct: 74 VSVSAPS----IVAGSNYS 88
>gb|EAA17417.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 556
Score = 32.0 bits (71), Expect = 6.1
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 340 DSSSSQFGGCGHTCANSGNGYKGEIERKLQPGMDVNS*ATEGR 212
+++++ F G C N +GY G E++L G++ ++ TEG+
Sbjct: 15 NNNNAPFDRVGKDCENKKSGYNGGYEKELDSGINSSNNITEGK 57
>ref|XP_229945.1| similar to ADP-ribosylation factor 4 [Rattus norvegicus]
Length = 142
Score = 32.0 bits (71), Expect = 6.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 353 QTQPLHTPRSTPSC------ISIQDPSRQVEVLRGTHYSEYPPKRKNMC 481
QT + +PSC +DP QVEV R + +YPPK K+ C
Sbjct: 91 QTCATRSDNGSPSCEEERTLTESEDPQEQVEVSR---HGKYPPKEKHCC 136
>ref|NP_001512.1| general transcription factor IIIC, polypeptide 2, beta 110kDa;
general transcription factor IIIC, polypeptide 2 (beta
subunit, 110kD) [Homo sapiens] gi|2136263|pir||A56465
transcription factor IIIC2 beta chain - human
gi|286019|dbj|BAA02800.1| KIAA0011 [Homo sapiens]
Length = 911
Score = 32.0 bits (71), Expect = 6.1
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 5 GAKQRNVSSLLPTVFLRNYTERVDPPLPFVLATY--PKVSSPRAPRRRQRNQPACCGGG 175
G + R ++ + ++L+ E + LP ++ PKVSSP P++ + QPA C GG
Sbjct: 180 GERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIR--QPAACPGG 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,369,202
Number of Sequences: 1393205
Number of extensions: 15824651
Number of successful extensions: 38830
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 36571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38697
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
