Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011382A_C01 KMC011382A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565390.1| actin depolymerizing factor 5; protein id: At2g... 256 2e-67
pir||B84543 actin depolymerizing factor 5 [imported] - Arabidops... 235 3e-61
ref|NP_195223.1| actin depolymerizing factor - like protein; pro... 224 5e-58
gb|AAF60173.1|AF236068_1 actin depolymerizing factor [Elaeis gui... 195 3e-49
gb|AAD23407.1| actin depolymerizing factor [Populus x canescens] 194 6e-49
>ref|NP_565390.1| actin depolymerizing factor 5; protein id: At2g16700.1, supported
by cDNA: 26940., supported by cDNA: gi_13430779,
supported by cDNA: gi_15293262, supported by cDNA:
gi_4185512 [Arabidopsis thaliana]
gi|17367303|sp|Q9ZNT3|ADF5_ARATH Actin-depolymerizing
factor 5 (ADF-5) (AtADF5) gi|4185513|gb|AAD09111.1|
actin depolymerizing factor 5 [Arabidopsis thaliana]
gi|4185517|gb|AAD09113.1| actin depolymerizing factor 5
[Arabidopsis thaliana]
gi|13430780|gb|AAK26012.1|AF360302_1 putative actin
depolymerizing factor 5 [Arabidopsis thaliana]
gi|15293263|gb|AAK93742.1| putative actin depolymerizing
factor 5 [Arabidopsis thaliana]
gi|20197460|gb|AAD24603.2| actin depolymerizing factor 5
[Arabidopsis thaliana] gi|21555039|gb|AAM63761.1|
Actin-depolymerizing factor 5 (ADF-5) (AtADF5)
[Arabidopsis thaliana]
Length = 143
Score = 256 bits (653), Expect = 2e-67
Identities = 125/143 (87%), Positives = 132/143 (91%)
Frame = +2
Query: 80 MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADL 259
MAMAFKMATTGM VTDEC +SFM+MKWKKVHRYIVFKI+E+SR VTVDKVGG GESY DL
Sbjct: 1 MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60
Query: 260 AASLPGDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDG 439
SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSKDGLRR L+G
Sbjct: 61 EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEG 120
Query: 440 ISYELQATDPTEMGFDVIQDRAK 508
I YELQATDPTEMGFD+IQDRAK
Sbjct: 121 IHYELQATDPTEMGFDIIQDRAK 143
>pir||B84543 actin depolymerizing factor 5 [imported] - Arabidopsis thaliana
Length = 132
Score = 235 bits (599), Expect = 3e-61
Identities = 114/132 (86%), Positives = 121/132 (91%)
Frame = +2
Query: 113 MWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPGDDCRY 292
M VTDEC +SFM+MKWKKVHRYIVFKI+E+SR VTVDKVGG GESY DL SLP DDCRY
Sbjct: 1 MRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRY 60
Query: 293 AVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPT 472
AVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSKDGLRR L+GI YELQATDPT
Sbjct: 61 AVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPT 120
Query: 473 EMGFDVIQDRAK 508
EMGFD+IQDRAK
Sbjct: 121 EMGFDIIQDRAK 132
>ref|NP_195223.1| actin depolymerizing factor - like protein; protein id: At4g34970.1
[Arabidopsis thaliana] gi|7441452|pir||T05767
actin-depolymerizing factor M4E13.30 - Arabidopsis
thaliana gi|2924508|emb|CAA17762.1| actin depolymerizing
factor-like protein [Arabidopsis thaliana]
gi|7270448|emb|CAB80214.1| actin depolymerizing
factor-like protein [Arabidopsis thaliana]
Length = 130
Score = 224 bits (571), Expect = 5e-58
Identities = 105/130 (80%), Positives = 116/130 (88%)
Frame = +2
Query: 119 VTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPGDDCRYAV 298
+TD+CK SFMEMKWKKVHRY+V+K++E+SR VTVDKVG GESY DLAASLP DDCRYAV
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAV 60
Query: 299 FDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEM 478
FDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK GLRR LDG+ YELQATDPTEM
Sbjct: 61 FDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEM 120
Query: 479 GFDVIQDRAK 508
GFD IQDRAK
Sbjct: 121 GFDKIQDRAK 130
>gb|AAF60173.1|AF236068_1 actin depolymerizing factor [Elaeis guineensis]
Length = 140
Score = 195 bits (495), Expect = 3e-49
Identities = 89/137 (64%), Positives = 113/137 (81%)
Frame = +2
Query: 98 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPG 277
M +GM V D+ K++F+E+K KKVHRY++F IDE+ + V V+K GGPGESY D A+LP
Sbjct: 1 MHLSGMGVADDSKSTFLELKRKKVHRYVIFMIDEKKKEVVVEKTGGPGESYDDFTAALPV 60
Query: 278 DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQ 457
+DCRYAV+DFDFVT DNC+KSKIFFI+WSP+ SRIR+K+LYATSKD R LDG+ YE+Q
Sbjct: 61 NDCRYAVYDFDFVTEDNCQKSKIFFISWSPSVSRIRSKMLYATSKDRFRHELDGVHYEIQ 120
Query: 458 ATDPTEMGFDVIQDRAK 508
ATDPTEM +V++DRAK
Sbjct: 121 ATDPTEMDLEVLRDRAK 137
>gb|AAD23407.1| actin depolymerizing factor [Populus x canescens]
Length = 138
Score = 194 bits (493), Expect = 6e-49
Identities = 91/135 (67%), Positives = 112/135 (82%)
Frame = +2
Query: 101 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPGD 280
A++GM V D K +F+E++ KKVHRY++FKIDE+ + V V+K GGP ESY D ASLP +
Sbjct: 3 ASSGMGVADHSKIAFVELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFTASLPEN 62
Query: 281 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQA 460
DCRYAV+DFDFVT +NC+KSKIFFIAWSP+ SRIRAK+LYATSKD RR LDGI YE+QA
Sbjct: 63 DCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 122
Query: 461 TDPTEMGFDVIQDRA 505
TDPTEM +VI++RA
Sbjct: 123 TDPTEMDLEVIRERA 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,966,077
Number of Sequences: 1393205
Number of extensions: 11290300
Number of successful extensions: 64488
Number of sequences better than 10.0: 309
Number of HSP's better than 10.0 without gapping: 52232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62520
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
