Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011376A_C01 KMC011376A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564825.1| expressed protein; protein id: At1g64150.1, sup... 44 8e-04
gb|AAK73997.1| At1g64150/F22C12_10 [Arabidopsis thaliana] gi|235... 44 8e-04
gb|AAF24562.1|AC007764_4 F22C12.9 [Arabidopsis thaliana] 44 8e-04
ref|NP_681169.1| ORF_ID:tlr0379~hypothetical protein [Thermosyne... 36 0.28
ref|NP_177032.1| transmembrane protein, putative; protein id: At... 35 0.37
>ref|NP_564825.1| expressed protein; protein id: At1g64150.1, supported by cDNA:
gi_15010675 [Arabidopsis thaliana]
Length = 370
Score = 44.3 bits (103), Expect = 8e-04
Identities = 17/35 (48%), Positives = 27/35 (76%)
Frame = -1
Query: 504 ILGGAFLANYISEKLVGYLGGGLFLIFAVATLSGV 400
+LGG+ L N++SEK + Y+GG LFL+FA T++ +
Sbjct: 334 VLGGSLLGNFLSEKAIAYVGGVLFLVFAAVTVAEI 368
>gb|AAK73997.1| At1g64150/F22C12_10 [Arabidopsis thaliana]
gi|23505909|gb|AAN28814.1| At1g64150/F22C12_10
[Arabidopsis thaliana]
Length = 370
Score = 44.3 bits (103), Expect = 8e-04
Identities = 17/35 (48%), Positives = 27/35 (76%)
Frame = -1
Query: 504 ILGGAFLANYISEKLVGYLGGGLFLIFAVATLSGV 400
+LGG+ L N++SEK + Y+GG LFL+FA T++ +
Sbjct: 334 VLGGSLLGNFLSEKAIAYVGGVLFLVFAAVTVAEI 368
>gb|AAF24562.1|AC007764_4 F22C12.9 [Arabidopsis thaliana]
Length = 388
Score = 44.3 bits (103), Expect = 8e-04
Identities = 17/35 (48%), Positives = 27/35 (76%)
Frame = -1
Query: 504 ILGGAFLANYISEKLVGYLGGGLFLIFAVATLSGV 400
+LGG+ L N++SEK + Y+GG LFL+FA T++ +
Sbjct: 352 VLGGSLLGNFLSEKAIAYVGGVLFLVFAAVTVAEI 386
>ref|NP_681169.1| ORF_ID:tlr0379~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294100|dbj|BAC07931.1|
ORF_ID:tlr0379~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 211
Score = 35.8 bits (81), Expect = 0.28
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 504 ILGGAFLANYISEKLVGYLGGGLFLIFAVAT 412
+LGG +A ISE+ + GG LFLIFA+ T
Sbjct: 172 VLGGGLIAGRISERTLTLSGGALFLIFAIVT 202
>ref|NP_177032.1| transmembrane protein, putative; protein id: At1g68650.1
[Arabidopsis thaliana] gi|25353311|pir||A96711
hypothetical protein F24J5.11 [imported] - Arabidopsis
thaliana gi|5734713|gb|AAD49978.1|AC008075_11 Is a
member of PF|01169 Uncharacterized (transmembrane
domain) protein family. [Arabidopsis thaliana]
gi|26452502|dbj|BAC43336.1| putative transmembrane
protein [Arabidopsis thaliana]
Length = 228
Score = 35.4 bits (80), Expect = 0.37
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 504 ILGGAFLANYISEKLVGYLGGGLFLIFAVATL 409
+LGG LA+ ISE++V GG LF+IF + +L
Sbjct: 191 VLGGKSLASQISERIVALSGGMLFIIFGIQSL 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,538,782
Number of Sequences: 1393205
Number of extensions: 7574872
Number of successful extensions: 16598
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16598
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
