Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011363A_C01 KMC011363A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701267.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.4
gb|EAA39809.1| GLP_512_23052_19189 [Giardia lamblia ATCC 50803] 32 4.4
ref|NP_112561.1| testis expressed sequence 15 [Homo sapiens] gi|... 31 9.7
>ref|NP_701267.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496334|gb|AAN35991.1|AE014842_13 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2213
Score = 32.3 bits (72), Expect = 4.4
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = -3
Query: 399 RNLLDSDYLRVNQETRITSSFTSSVLESFHYDHFALEFPFRPINSYTLNSTCLESFGVRY 220
+N +S ++ N + + SS + L F E F IN Y L S +F +
Sbjct: 1176 KNSYNSSHIYSNADQKNLSSINKNKLIKIKTQKFCKENYFFHINKYFLKSLRKYNFQISK 1235
Query: 219 NCFSSCSYLPNSLIKLTIW*NFDV 148
N ++ Y+P + IK+ I N+++
Sbjct: 1236 NQKNNHIYIPKTNIKILIQANYNL 1259
>gb|EAA39809.1| GLP_512_23052_19189 [Giardia lamblia ATCC 50803]
Length = 1287
Score = 32.3 bits (72), Expect = 4.4
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = -3
Query: 465 EALSTLIICDSRIPFSSWLAGTRNLLDSDYLRVNQETRITSSFTSSVLESFHYDHFALEF 286
E L +IC+ SS +AG + D D +RV+Q + V+ F D
Sbjct: 492 EYLFFSLICEISWSDSSLIAGVKTPFDFDLVRVDQPEGSQFIISHLVVPGFSVDAGLSLC 551
Query: 285 PFRPINSYTLNSTC 244
PI TLN+TC
Sbjct: 552 SAPPITEATLNTTC 565
>ref|NP_112561.1| testis expressed sequence 15 [Homo sapiens]
gi|13603893|gb|AAK31984.1|AF285605_1 testis protein
TEX15 [Homo sapiens]
Length = 2789
Score = 31.2 bits (69), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = -3
Query: 381 DYLRVNQETRITSSFTSSVLESFHYDHFALEFPFRP 274
D + + QE IT S TS++ + DH ALE+ P
Sbjct: 297 DKILITQELEITKSSTSTIKDKDELDHLALEWQITP 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,095,523
Number of Sequences: 1393205
Number of extensions: 8817416
Number of successful extensions: 17900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
