Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011355A_C01 KMC011355A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_496139.1| Sushi domain family member [Caenorhabditis eleg... 36 0.35
emb|CAA87369.2| Hypothetical protein F26C11.3 [Caenorhabditis el... 36 0.35
dbj|BAA76831.1| KIAA0987 protein [Homo sapiens] 35 0.60
sp|Q9Y2J2|E4L3_HUMAN Band 4.1-like protein 3 (4.1B) (Differentia... 35 0.60
gb|EAA32780.1| predicted protein [Neurospora crassa] 34 1.7
>ref|NP_496139.1| Sushi domain family member [Caenorhabditis elegans]
gi|1176795|sp|Q09550|YQU3_CAEEL HYPOTHETICAL 133.5 KD
PROTEIN F26C11.3 IN CHROMOSOME II gi|7499889|pir||T21389
hypothetical protein F26C11.3 - Caenorhabditis elegans
Length = 1251
Score = 36.2 bits (82), Expect = 0.35
Identities = 39/143 (27%), Positives = 51/143 (35%)
Frame = +1
Query: 115 SRTKPKREWSSSSSASSSSFLNCKPTPKSVTVNPHPNRQRLNLFST*NRYRASGRGPSQS 294
S + P E SSSS+ S SS + P+S TV P L + S G S S
Sbjct: 292 STSSPMAETSSSSTTSQSSPASTSTVPESSTVGSTPTTGLTTLSTNEQSTSTSSGGHSTS 351
Query: 295 KIKTT*LFQIRNNVICIYLSL*FLNINPSLPNLSSSSSSVTKSSSVFPSPFPNNQI*KQL 474
TT + + + + SSSS S T+SS+ S N
Sbjct: 352 TFGTT-------------SETPETSTDFTATSTSSSSDSSTQSSNAQTSTIENGSTTTNF 398
Query: 475 PTCPRRSRTKIIQPPTVNSHTSG 543
+ P S T T N T G
Sbjct: 399 TSAPSTSSTPATPTTTYNWPTGG 421
>emb|CAA87369.2| Hypothetical protein F26C11.3 [Caenorhabditis elegans]
Length = 1240
Score = 36.2 bits (82), Expect = 0.35
Identities = 39/143 (27%), Positives = 51/143 (35%)
Frame = +1
Query: 115 SRTKPKREWSSSSSASSSSFLNCKPTPKSVTVNPHPNRQRLNLFST*NRYRASGRGPSQS 294
S + P E SSSS+ S SS + P+S TV P L + S G S S
Sbjct: 292 STSSPMAETSSSSTTSQSSPASTSTVPESSTVGSTPTTGLTTLSTNEQSTSTSSGGHSTS 351
Query: 295 KIKTT*LFQIRNNVICIYLSL*FLNINPSLPNLSSSSSSVTKSSSVFPSPFPNNQI*KQL 474
TT + + + + SSSS S T+SS+ S N
Sbjct: 352 TFGTT-------------SETPETSTDFTATSTSSSSDSSTQSSNAQTSTIENGSTTTNF 398
Query: 475 PTCPRRSRTKIIQPPTVNSHTSG 543
+ P S T T N T G
Sbjct: 399 TSAPSTSSTPATPTTTYNWPTGG 421
>dbj|BAA76831.1| KIAA0987 protein [Homo sapiens]
Length = 1115
Score = 35.4 bits (80), Expect = 0.60
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 240 FVFHLKQVQSFR*RAFPIENQNYLTFPNQEQCHMHLPQSL---IPQHQPFSSKPIFFFIF 410
F F L+ +SF +++ YL+FPN + ++ LPQSL +P P S P F FIF
Sbjct: 614 FSFSLQLPESF---PSLLDDDGYLSFPNLSETNL-LPQSLQHYLPIRSP-SLVPCFLFIF 668
Query: 411 CHKKLFSFSIP 443
SFS+P
Sbjct: 669 FFLLSASFSVP 679
>sp|Q9Y2J2|E4L3_HUMAN Band 4.1-like protein 3 (4.1B) (Differentially expressed in
adenocarcinoma of the lung protein 1) (DAL-1)
Length = 1087
Score = 35.4 bits (80), Expect = 0.60
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 240 FVFHLKQVQSFR*RAFPIENQNYLTFPNQEQCHMHLPQSL---IPQHQPFSSKPIFFFIF 410
F F L+ +SF +++ YL+FPN + ++ LPQSL +P P S P F FIF
Sbjct: 586 FSFSLQLPESF---PSLLDDDGYLSFPNLSETNL-LPQSLQHYLPIRSP-SLVPCFLFIF 640
Query: 411 CHKKLFSFSIP 443
SFS+P
Sbjct: 641 FFLLSASFSVP 651
>gb|EAA32780.1| predicted protein [Neurospora crassa]
Length = 411
Score = 33.9 bits (76), Expect = 1.7
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 370 INPSLP-NLSSSSSSVTKSSSVFPSPFPNNQI*KQLPTCPRRSRTKIIQP---PTVNSHT 537
I+P P + SSSSSS ++SSS SP NQ + P P+ + II+P P +N+ T
Sbjct: 255 ISPVFPTSSSSSSSSSSRSSSPTQSPQHENQCDPEPPQSPQATSPPIIRPRPRPLLNAKT 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,276,989
Number of Sequences: 1393205
Number of extensions: 13344390
Number of successful extensions: 53709
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 44884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52224
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
