Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011328A_C01 KMC011328A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86203 hypothetical protein [imported] - Arabidopsis thalia... 45 4e-04
ref|NP_172170.1| bZIP protein; protein id: At1g06850.1, supporte... 45 5e-04
ref|NP_181594.1| bZip DNA binding protein; protein id: At2g40620... 42 0.003
pir||T52624 b-Zip DNA binding protein [imported] - Arabidopsis t... 42 0.003
gb|EAA22880.1| Mus musculus GCN2alpha [Plasmodium yoelii yoelii] 35 0.40
>pir||D86203 hypothetical protein [imported] - Arabidopsis thaliana
gi|7523698|gb|AAF63137.1|AC011001_7 Similar to bZIP
transcription factors [Arabidopsis thaliana]
Length = 412
Score = 45.4 bits (106), Expect = 4e-04
Identities = 32/100 (32%), Positives = 49/100 (49%)
Frame = -1
Query: 516 HADSFTLGMHHLSYSQAPFSLHQPQHGRSELQAMQMSHLHSLSSDVSTPHHQPMFDLSTP 337
++DSF +GM + YS + F P HG L MQM HS PM ++S
Sbjct: 249 NSDSFDMGMQQIQYSSSTFMAIPPYHGSMNLHDMQM---HS--------SFNPM-EMSNS 296
Query: 336 YDMSEMLSSDSIGQFQGLDIGHRVSHVLMPDGRSVSVNKI 217
+S+ L + G+ QGL+I S ++ +G S+S + I
Sbjct: 297 QSVSDFLQN---GRMQGLEISSNSSSLVKSEGPSLSASAI 333
>ref|NP_172170.1| bZIP protein; protein id: At1g06850.1, supported by cDNA:
gi_17064795 [Arabidopsis thaliana]
gi|17064796|gb|AAL32552.1| Similar to bZIP transcription
factors [Arabidopsis thaliana]
gi|17065882|emb|CAD12035.1| AtbZIP transcription factor
[Arabidopsis thaliana] gi|23197788|gb|AAN15421.1|
Similar to bZIP transcription factors [Arabidopsis
thaliana]
Length = 337
Score = 45.1 bits (105), Expect = 5e-04
Identities = 31/104 (29%), Positives = 51/104 (48%)
Frame = -1
Query: 516 HADSFTLGMHHLSYSQAPFSLHQPQHGRSELQAMQMSHLHSLSSDVSTPHHQPMFDLSTP 337
++DSF +GM + YS + F P HG L MQM HS PM ++S
Sbjct: 249 NSDSFDMGMQQIQYSSSTFMAIPPYHGSMNLHDMQM---HS--------SFNPM-EMSNS 296
Query: 336 YDMSEMLSSDSIGQFQGLDIGHRVSHVLMPDGRSVSVNKIDNPF 205
+S+ L + G+ QGL+I S ++ +G S+S ++ + +
Sbjct: 297 QSVSDFLQN---GRMQGLEISSNSSSLVKSEGPSLSASESSSAY 337
>ref|NP_181594.1| bZip DNA binding protein; protein id: At2g40620.1, supported by
cDNA: gi_18377631, supported by cDNA: gi_20465782
[Arabidopsis thaliana] gi|25408715|pir||G84831 probable
bZIP transcription factor [imported] - Arabidopsis
thaliana gi|2651296|gb|AAB87576.1| putative bZIP
transcription factor [Arabidopsis thaliana]
gi|18377632|gb|AAL66966.1| putative bZIP transcription
factor [Arabidopsis thaliana] gi|20465783|gb|AAM20380.1|
putative bZIP transcription factor [Arabidopsis
thaliana]
Length = 367
Score = 42.4 bits (98), Expect = 0.003
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Frame = -1
Query: 522 VTHADSFTLGMHHLSYSQAP---FSLHQPQHGRSELQAMQMSHLHSL---------SSDV 379
V+ AD++ LGM H+ Y Q P F H Q QM+H L SS
Sbjct: 246 VSPADAYNLGMAHMQYQQQPQQSFFQHHHQQQTDAQNLQQMTHQFHLFQPNNNQNQSSRT 305
Query: 378 STP------HHQPMFDLSTPYDMSEMLSSDSIGQFQGLDI 277
+ P HH + + SE + D +G+ QGLDI
Sbjct: 306 NPPTAHQLMHHATSNAPAQSHSYSEAMHEDHLGRLQGLDI 345
>pir||T52624 b-Zip DNA binding protein [imported] - Arabidopsis thaliana
gi|2246376|emb|CAB06697.1| b-Zip DNA binding protein
[Arabidopsis thaliana]
Length = 367
Score = 42.4 bits (98), Expect = 0.003
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Frame = -1
Query: 522 VTHADSFTLGMHHLSYSQAP---FSLHQPQHGRSELQAMQMSHLHSL---------SSDV 379
V+ AD++ LGM H+ Y Q P F H Q QM+H L SS
Sbjct: 246 VSPADAYNLGMAHMQYQQQPQQSFFQHHHQQQTDAQNLQQMTHQFHLFQPNNNQNQSSRT 305
Query: 378 STP------HHQPMFDLSTPYDMSEMLSSDSIGQFQGLDI 277
+ P HH + + SE + D +G+ QGLDI
Sbjct: 306 NPPTAHQLMHHATSNAPAQSHSYSEAMHEDHLGRLQGLDI 345
>gb|EAA22880.1| Mus musculus GCN2alpha [Plasmodium yoelii yoelii]
Length = 1496
Score = 35.4 bits (80), Expect = 0.40
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 43 KLFFKIS*SNHKVKSNKKLNRKTKKINTFRSHSCQSMNNSLNRVVTCWSIKFASKGIVNF 222
K + K++ N + ++N KL RKT + +F +S +NN N + K + GI
Sbjct: 199 KGYIKVNRENEREETNAKLKRKTSAVRSFSENSINFINNLSNYSGSKQFNKIGNLGIQKL 258
Query: 223 -INRNGATIRHQNMRNPVTYVQPLK 294
IN++GA + ++ T + K
Sbjct: 259 GINKSGADTDSEMVKKEQTNINITK 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,657,997
Number of Sequences: 1393205
Number of extensions: 8251213
Number of successful extensions: 28567
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 27719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28541
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
