Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011326A_C01 KMC011326A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197435.1| putative protein; protein id: At5g19340.1 [Arab... 144 6e-34
ref|NP_566266.1| expressed protein; protein id: At3g05980.1, sup... 135 3e-31
gb|AAO00762.1| unknown protein [Arabidopsis thaliana] 43 0.002
ref|NP_187903.1| unknown protein; protein id: At3g12970.1 [Arabi... 43 0.002
ref|NP_175998.1| unknown protein; protein id: At1g56020.1 [Arabi... 42 0.004
>ref|NP_197435.1| putative protein; protein id: At5g19340.1 [Arabidopsis thaliana]
Length = 255
Score = 144 bits (364), Expect = 6e-34
Identities = 80/129 (62%), Positives = 97/129 (75%), Gaps = 13/129 (10%)
Frame = -2
Query: 564 NWFVDDDPSPRPPKCTVLWKELLRLKKQRSST----------LSPSSSSSSSSSSASSLG 415
+WF+DDDPSPRPPKCTVLWKELLRLKKQR++T LSPSSSSSS+SSS+SS+G
Sbjct: 134 SWFLDDDPSPRPPKCTVLWKELLRLKKQRTTTTTTASTRVSSLSPSSSSSSTSSSSSSIG 193
Query: 414 DVAAKEGKDGTRSKDQQHVKRLKKGLERTRSATIRIRPMINVPICTQVKSSA-LPPLFPP 238
D KE + ++ KR KKGLERTRS T+RIRPMI+VP+CT KSS+ LPPLFP
Sbjct: 194 DAVKKEER-------EKEGKRGKKGLERTRSVTMRIRPMIHVPVCTPSKSSSRLPPLFPL 246
Query: 237 K--KGKLER 217
+ K ++ER
Sbjct: 247 RLQKNRVER 255
>ref|NP_566266.1| expressed protein; protein id: At3g05980.1, supported by cDNA:
8978. [Arabidopsis thaliana]
gi|6671959|gb|AAF23218.1|AC013454_5 unknown protein
[Arabidopsis thaliana] gi|21617931|gb|AAM66981.1|
unknown [Arabidopsis thaliana]
Length = 245
Score = 135 bits (341), Expect = 3e-31
Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 10/125 (8%)
Frame = -2
Query: 561 WFVDDDPSPRPPKCTVLWKELLRLKKQRSSTLSP-------SSSSSSSSSSASSLGDVAA 403
WF+D+DPSPRPPKCTVLWKELLRLKKQR+ + SP S S SSS+SS+SSL D A
Sbjct: 126 WFIDEDPSPRPPKCTVLWKELLRLKKQRNPSSSPVTARTVSSLSPSSSTSSSSSLEDAAK 185
Query: 402 KEGKDGTRSKDQQHVKRLKKGLERTRSATIRIRPMINVPICTQVKSS-ALPPLFP--PKK 232
+E K ++ KR KKGLERTRSA++RIRPMI+VPICT KSS LPPLFP KK
Sbjct: 186 REEK-------EKEGKRGKKGLERTRSASMRIRPMIHVPICTPSKSSLPLPPLFPLSLKK 238
Query: 231 GKLER 217
++ER
Sbjct: 239 NRVER 243
>gb|AAO00762.1| unknown protein [Arabidopsis thaliana]
Length = 381
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/39 (53%), Positives = 27/39 (68%)
Frame = -2
Query: 540 SPRPPKCTVLWKELLRLKKQRSSTLSPSSSSSSSSSSAS 424
SPR P+CTV W+ELL LK+ + S+SSSS SS+S
Sbjct: 110 SPRAPRCTVRWRELLGLKRLAKTQQEASASSSSRLSSSS 148
>ref|NP_187903.1| unknown protein; protein id: At3g12970.1 [Arabidopsis thaliana]
gi|15795127|dbj|BAB02505.1| gene_id:MGH6.10~unknown
protein [Arabidopsis thaliana]
Length = 381
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/39 (53%), Positives = 27/39 (68%)
Frame = -2
Query: 540 SPRPPKCTVLWKELLRLKKQRSSTLSPSSSSSSSSSSAS 424
SPR P+CTV W+ELL LK+ + S+SSSS SS+S
Sbjct: 110 SPRAPRCTVRWRELLGLKRLAKTQQEASASSSSRLSSSS 148
>ref|NP_175998.1| unknown protein; protein id: At1g56020.1 [Arabidopsis thaliana]
gi|25361094|pir||D96601 hypothetical protein T6H22.18
[imported] - Arabidopsis thaliana
gi|6056382|gb|AAF02846.1|AC009894_17 Unknown protein
[Arabidopsis thaliana]
gi|8778317|gb|AAF79326.1|AC002304_19 F14J16.33
[Arabidopsis thaliana]
Length = 398
Score = 42.4 bits (98), Expect = 0.004
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -2
Query: 555 VDDDPSPRPPKCTVLWKELLRLK-----KQRSSTLSPSSSSSSSSSSASSLGDVAAKEGK 391
+ D SP+ P+CT W+ELL LK K++ ++ SSSSSS++ SS + K
Sbjct: 122 ISDLFSPKAPRCTTRWRELLGLKRLVNAKEQEESIKASSSSSSTNPKTSSFKQFLHRGSK 181
Query: 390 DGT 382
T
Sbjct: 182 SST 184
Score = 31.6 bits (70), Expect = 7.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 342 GLERTRSATIRIRPMINVPICT 277
G+ R+ SA +RI P++NVP+C+
Sbjct: 324 GMPRSYSANVRITPVLNVPVCS 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,434,713
Number of Sequences: 1393205
Number of extensions: 11088366
Number of successful extensions: 133511
Number of sequences better than 10.0: 432
Number of HSP's better than 10.0 without gapping: 62917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101736
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
