Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011305A_C01 KMC011305A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65898.1| OJ1710_H11.5 [Oryza sativa (japonica cultivar-gr... 39 0.022
ref|NP_190574.1| putative protein; protein id: At3g50050.1 [Arab... 37 0.083
ref|NP_485661.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 35 0.32
ref|NP_199124.1| putative protein; protein id: At5g43100.1 [Arab... 34 0.92
ref|NP_758170.1| conserved hypothetical protein [Mycoplasma pene... 33 1.6
>dbj|BAC65898.1| OJ1710_H11.5 [Oryza sativa (japonica cultivar-group)]
Length = 631
Score = 39.3 bits (90), Expect = 0.022
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = -1
Query: 476 PPPKWNWWQPYHMLVGLVSILALLIGLSILGIFLIWKK--RQQNAHPLPRRLTEAVPEPE 303
P K +W++ + + + L +L +L+ LS L + ++W+K R Q A+ R + AVPE E
Sbjct: 571 PLSKRSWFRDHVVSILLGILLVVLLTLSALLVLIVWRKKFRGQAAY---RPVDSAVPEQE 627
Query: 302 LQPL 291
LQPL
Sbjct: 628 LQPL 631
>ref|NP_190574.1| putative protein; protein id: At3g50050.1 [Arabidopsis thaliana]
gi|11357751|pir||T45858 hypothetical protein F3A4.130 -
Arabidopsis thaliana gi|6522926|emb|CAB62113.1| putative
protein [Arabidopsis thaliana]
Length = 632
Score = 37.4 bits (85), Expect = 0.083
Identities = 21/52 (40%), Positives = 35/52 (66%), Gaps = 1/52 (1%)
Frame = -1
Query: 443 HMLVGLVSILALLIGLSILGIFLIWKKRQQNAHPLPRRLTEA-VPEPELQPL 291
+++V + I+A+++GLS G +LIWK++Q + P + EA V E ELQP+
Sbjct: 583 NIVVIAIGIIAVIVGLSAYGAWLIWKRKQTSIPYKP--VDEAIVAEQELQPI 632
>ref|NP_485661.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25341303|pir||AG2008
hypothetical protein alr1621 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135441|dbj|BAB77987.1|
ORF_ID:alr1621~hypothetical protein [Nostoc sp. PCC
7120]
Length = 567
Score = 35.4 bits (80), Expect = 0.32
Identities = 26/87 (29%), Positives = 43/87 (48%)
Frame = -1
Query: 431 GLVSILALLIGLSILGIFLIWKKRQQNAHPLPRRLTEAVPEPELQPL*ANQFVLLLLNII 252
G ++++ L+ G+ I+G++L W + Q +H RR T+A L A +L L+N +
Sbjct: 35 GTITLVLLISGIVIIGLWLAW--QSQRSHWWKRRSTQAGTNALAATL-AVLVILGLINFL 91
Query: 251 LD*FQ*HIQLTTIQSMLYKPLVTELVQ 171
+Q LT Q P +LVQ
Sbjct: 92 GSRYQIRADLTEAQLFTLSPQSQQLVQ 118
>ref|NP_199124.1| putative protein; protein id: At5g43100.1 [Arabidopsis thaliana]
gi|9757837|dbj|BAB08274.1| contains similarity to
chloroplast nucleoid DNA-binding protein~gene_id:MMG4.12
[Arabidopsis thaliana]
Length = 586
Score = 33.9 bits (76), Expect = 0.92
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = -1
Query: 461 NWWQPYHMLVGLV--SILALLIGLSILGIFLIWKKRQQNAHPLPRRLTEAVPEPELQPL 291
+WW+ + L+G+V ++++LL+ ++ + L+W++R+Q + A+ E ELQPL
Sbjct: 524 SWWEKH--LLGVVGGAMISLLVTSVMIKLALVWRRRKQE-EATYEPVNAAIKEQELQPL 579
>ref|NP_758170.1| conserved hypothetical protein [Mycoplasma penetrans]
gi|26454245|dbj|BAC44574.1| conserved hypothetical
protein [Mycoplasma penetrans]
Length = 1249
Score = 33.1 bits (74), Expect = 1.6
Identities = 20/48 (41%), Positives = 28/48 (57%), Gaps = 4/48 (8%)
Frame = -2
Query: 175 SSFVLKEIKLSSISSDHLTLTEYIDNSL----YIPSSVNGILFVNIVI 44
SS EI SS+ D+ L+ +ID+ L PS+VNGIL V +V+
Sbjct: 894 SSITQSEILSSSLLRDNSNLSSWIDSGLATITLTPSNVNGILEVEVVL 941
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,121,286
Number of Sequences: 1393205
Number of extensions: 7526386
Number of successful extensions: 20677
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20646
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
