Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011304A_C01 KMC011304A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91860.1| P0702H08.17 [Oryza sativa (japonica cultivar-gro... 39 0.057
ref|NP_508349.1| Putative protein, nematode specific [Caenorhabd... 36 0.28
ref|NP_179381.1| putative non-LTR retroelement reverse transcrip... 36 0.28
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 36 0.28
ref|NP_180710.1| putative non-LTR retroelement reverse transcrip... 36 0.37
>dbj|BAB91860.1| P0702H08.17 [Oryza sativa (japonica cultivar-group)]
Length = 530
Score = 38.5 bits (88), Expect = 0.057
Identities = 20/58 (34%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
Frame = +3
Query: 93 KYLIYLRSI--VLTRKRLWNKGAVVPTIFCLRCDRLEETMDHALRDCP*ARRVWFASV 260
+Y ++L ++ T RL ++G P C+ CD+ EET+DH L CP +R++W+ ++
Sbjct: 261 RYFLWLVALNRCWTTYRLRSRGLSHPDR-CVLCDQCEETIDHLLVACPESRQLWWVAL 317
>ref|NP_508349.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|25375642|pir||G89472 protein ZC53.1 [imported] -
Caenorhabditis elegans gi|1174274|gb|AAB52616.1|
Hypothetical protein ZC53.1 [Caenorhabditis elegans]
Length = 406
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/74 (28%), Positives = 32/74 (42%)
Frame = -3
Query: 399 SEIPEGEDAGAQSHKNSQQPPQEQKGSTPETSTHSSSHHPFPSYNPSLKQTTPA*LKDNL 220
S+ P G G K+ Q+P +G P+ STH + P S+K T + N
Sbjct: 221 SQQPRGSARGDNKRKSPQEPSMSYEGPKPKHSTHETPEDAKPEAFTSVKPPTSS---GNQ 277
Query: 219 SMHDPLFPPIYHTV 178
S+ P+ P Y +
Sbjct: 278 SIRAPMNEPSYERI 291
>ref|NP_179381.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g17910.1 [Arabidopsis thaliana]
gi|25411819|pir||H84557 hypothetical protein At2g17910
[imported] - Arabidopsis thaliana
Length = 1344
Score = 36.2 bits (82), Expect = 0.28
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 174 CLRCDRLEETMDHALRDCP*ARRVW 248
CL CD ET++H L +CP AR+VW
Sbjct: 1062 CLMCDTENETINHILFECPLARQVW 1086
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 36.2 bits (82), Expect = 0.28
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 174 CLRCDRLEETMDHALRDCP*ARRVW 248
CL CD ET++H L +CP AR+VW
Sbjct: 1083 CLMCDTENETINHILFECPLARQVW 1107
>ref|NP_180710.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g31520.1 [Arabidopsis thaliana]
gi|25408166|pir||G84721 hypothetical protein At2g31520
[imported] - Arabidopsis thaliana
gi|4582447|gb|AAD24831.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1524
Score = 35.8 bits (81), Expect = 0.37
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 108 LRSIVLTRKRLWNKGAVVPTIFCLRCDRLEETMDHALRDCP*ARRVWFAS 257
L + T +RL +G + I C RC R E+++HAL CP A W+ S
Sbjct: 1219 LSQALATTERLTTRGMRIDPI-CPRCHRENESINHALFTCPFATMAWWLS 1267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,826,181
Number of Sequences: 1393205
Number of extensions: 10499646
Number of successful extensions: 32913
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 30304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32755
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
