Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011300A_C01 KMC011300A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09820 fiber protein 1 [imported] - upland cotton gi|326482... 106 2e-23
dbj|BAC20874.1| putative fiber protein [Oryza sativa (japonica c... 102 2e-21
ref|NP_176321.1| cotton fiber expressed protein, putative; prote... 83 1e-15
ref|NP_200241.1| cotton fiber expressed protein 1-like protein; ... 77 3e-13
ref|NP_172588.1| hypothetical protein; protein id: At1g11220.1 [... 59 8e-08
>pir||T09820 fiber protein 1 [imported] - upland cotton
gi|3264828|gb|AAC33276.1| cotton fiber expressed protein
1 [Gossypium hirsutum]
Length = 331
Score = 106 bits (264), Expect(2) = 2e-23
Identities = 62/103 (60%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = -2
Query: 767 LESTWRTITEGRAMPLTRHLKKSETMETQPRR-NAAPLADLNGPVMKKSETFGGREK-KA 594
LE+TW+ ITEG++MPL+RHLKKS+T E R N L + P+MKKSETF R +
Sbjct: 215 LENTWKMITEGKSMPLSRHLKKSDTWENHGRDINVEALT--SSPLMKKSETFRDRTNYQL 272
Query: 593 AAATTSSPGSGGKLRKESSLSQDELNRRVEAFINKFNAEMRLQ 465
SS + GKLRKE SLSQDELNRRVEAFI KFN EMRLQ
Sbjct: 273 PPEQVSSFPASGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQ 315
Score = 25.4 bits (54), Expect(2) = 2e-23
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -3
Query: 460 QESLRQYKEMVNR 422
QESL QY EMVNR
Sbjct: 317 QESLNQYMEMVNR 329
>dbj|BAC20874.1| putative fiber protein [Oryza sativa (japonica cultivar-group)]
Length = 333
Score = 102 bits (254), Expect(2) = 2e-21
Identities = 59/106 (55%), Positives = 68/106 (63%), Gaps = 5/106 (4%)
Frame = -2
Query: 767 LESTWRTITEGRAMPLTRHLKKSETMETQP-RRNAAPLADLNGP----VMKKSETFGGRE 603
LESTW+ ITEGRA PL RHLKKS+T ET+P RR + + P M+K+ETF
Sbjct: 218 LESTWKAITEGRAPPLARHLKKSDTWETRPGRRQSGSGGGEDAPPPATAMRKAETFN--- 274
Query: 602 KKAAAATTSSPGSGGKLRKESSLSQDELNRRVEAFINKFNAEMRLQ 465
G G K+R+E SL QDELNRRVEAFINKFN EMRLQ
Sbjct: 275 -----EAAGGGGGGKKVRREPSLGQDELNRRVEAFINKFNMEMRLQ 315
Score = 22.3 bits (46), Expect(2) = 2e-21
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 460 QESLRQYKEMVNR 422
QESL+ Y EM++R
Sbjct: 317 QESLKHYNEMISR 329
>ref|NP_176321.1| cotton fiber expressed protein, putative; protein id: At1g61260.1
[Arabidopsis thaliana] gi|25373438|pir||F96638
hypothetical protein F11P17.2 [imported] - Arabidopsis
thaliana gi|2443876|gb|AAB71469.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 339
Score = 82.8 bits (203), Expect(2) = 1e-15
Identities = 50/101 (49%), Positives = 64/101 (62%)
Frame = -2
Query: 767 LESTWRTITEGRAMPLTRHLKKSETMETQPRRNAAPLADLNGPVMKKSETFGGREKKAAA 588
LE+TW+ ITEG++ PLTR L + +T R ++ + PV KKS+TF R
Sbjct: 231 LENTWKMITEGKSTPLTRQLYRRS--DTFGRGDSGGVDGEVKPVYKKSDTFRDRTNYYQL 288
Query: 587 ATTSSPGSGGKLRKESSLSQDELNRRVEAFINKFNAEMRLQ 465
A T+ K+RKE SLSQ+ELNRRVEAFI KFN EM+LQ
Sbjct: 289 AETA------KVRKEPSLSQEELNRRVEAFIKKFNEEMKLQ 323
Score = 22.7 bits (47), Expect(2) = 1e-15
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 457 ESLRQYKEMVNR 422
ESLRQYKE+ +R
Sbjct: 326 ESLRQYKEITSR 337
>ref|NP_200241.1| cotton fiber expressed protein 1-like protein; protein id:
At5g54300.1, supported by cDNA: gi_20466705 [Arabidopsis
thaliana] gi|9759503|dbj|BAB10753.1| cotton fiber
expressed protein 1-like protein [Arabidopsis thaliana]
gi|20466706|gb|AAM20670.1| cotton fiber expressed
protein 1-like protein [Arabidopsis thaliana]
gi|23198238|gb|AAN15646.1| cotton fiber expressed
protein 1-like protein [Arabidopsis thaliana]
Length = 326
Score = 77.0 bits (188), Expect = 3e-13
Identities = 46/101 (45%), Positives = 58/101 (56%)
Frame = -2
Query: 767 LESTWRTITEGRAMPLTRHLKKSETMETQPRRNAAPLADLNGPVMKKSETFGGREKKAAA 588
LE+TW+ ITEGR+ PLT+HL KS+T + + ++P N M KSE
Sbjct: 219 LETTWKKITEGRSTPLTKHLTKSDTWQERAHVQSSPE---NKEKMTKSENLKDINTPTEE 275
Query: 587 ATTSSPGSGGKLRKESSLSQDELNRRVEAFINKFNAEMRLQ 465
T L++E S Q+ELNRRVEAFI KFN EMRLQ
Sbjct: 276 KTV--------LKREPSPGQEELNRRVEAFIKKFNEEMRLQ 308
>ref|NP_172588.1| hypothetical protein; protein id: At1g11220.1 [Arabidopsis
thaliana]
Length = 310
Score = 58.9 bits (141), Expect = 8e-08
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Frame = -2
Query: 767 LESTWRTITE-GRAMPLTRHLKKSETMETQPRRNAAPLADLNG-----PVMKKSETFGG- 609
LE+TW ITE G++ PLT H +K+ ++ LN PV++K+ETF
Sbjct: 213 LENTWNMITEEGKSTPLTCHYRKTS------------MSGLNAGGDVKPVLRKAETFRDV 260
Query: 608 REKKAAAATTSSPGSGGKLRKESSLSQDELNRRVEAFINKFNAEMRLQS 462
+ ++ T +SP K++KE S S++ELNRRVEAFI K E RL+S
Sbjct: 261 TNYRQSSPTVTSPV---KMKKEMSPSREELNRRVEAFIKKCKEE-RLES 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,963,188
Number of Sequences: 1393205
Number of extensions: 14870866
Number of successful extensions: 155536
Number of sequences better than 10.0: 2729
Number of HSP's better than 10.0 without gapping: 81488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129626
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
