Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011289A_C01 KMC011289A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565212.1| FtsH protease, putative; protein id: At1g79560.... 134 1e-30
gb|AAK59670.2| putative FtsH protease [Arabidopsis thaliana] 134 1e-30
pir||A96827 hypothetical protein T8K14.2 [imported] - Arabidopsi... 134 1e-30
gb|EAA21680.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.69
gb|AAO49696.1| similar to Plasmodium falciparum (isolate 3D7). H... 34 1.5
>ref|NP_565212.1| FtsH protease, putative; protein id: At1g79560.1 [Arabidopsis
thaliana]
Length = 1008
Score = 134 bits (336), Expect = 1e-30
Identities = 66/86 (76%), Positives = 75/86 (86%)
Frame = -2
Query: 583 IEETEELAMNALRDNRHILDLVTRELLERSRITGLEVEEKLKGLSPVMFEDFIKPFQIDL 404
IEETEELAMNALR NRHILDL+TRELLE+SRITGLEVEEK+K LSP+MFEDF+KPFQI+
Sbjct: 922 IEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFVKPFQINP 981
Query: 403 DEDGPLPHNDRVRYQTPNLYPAPLHR 326
D++ LPH DRV YQ +L APLHR
Sbjct: 982 DDEELLPHKDRVSYQPVDLRAAPLHR 1007
>gb|AAK59670.2| putative FtsH protease [Arabidopsis thaliana]
Length = 646
Score = 134 bits (336), Expect = 1e-30
Identities = 66/86 (76%), Positives = 75/86 (86%)
Frame = -2
Query: 583 IEETEELAMNALRDNRHILDLVTRELLERSRITGLEVEEKLKGLSPVMFEDFIKPFQIDL 404
IEETEELAMNALR NRHILDL+TRELLE+SRITGLEVEEK+K LSP+MFEDF+KPFQI+
Sbjct: 560 IEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFVKPFQINP 619
Query: 403 DEDGPLPHNDRVRYQTPNLYPAPLHR 326
D++ LPH DRV YQ +L APLHR
Sbjct: 620 DDEELLPHKDRVSYQPVDLRAAPLHR 645
>pir||A96827 hypothetical protein T8K14.2 [imported] - Arabidopsis thaliana
gi|4835753|gb|AAD30220.1|AC007202_2 Is a member of
PF|00004 ATPases associated with various cellular
activities (AAA) family. ESTs gb|T43031, gb|R64750,
gb|AA394742 and gb|AI100347 come from this gene.
[Arabidopsis thaliana]
Length = 998
Score = 134 bits (336), Expect = 1e-30
Identities = 66/86 (76%), Positives = 75/86 (86%)
Frame = -2
Query: 583 IEETEELAMNALRDNRHILDLVTRELLERSRITGLEVEEKLKGLSPVMFEDFIKPFQIDL 404
IEETEELAMNALR NRHILDL+TRELLE+SRITGLEVEEK+K LSP+MFEDF+KPFQI+
Sbjct: 912 IEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFVKPFQINP 971
Query: 403 DEDGPLPHNDRVRYQTPNLYPAPLHR 326
D++ LPH DRV YQ +L APLHR
Sbjct: 972 DDEELLPHKDRVSYQPVDLRAAPLHR 997
>gb|EAA21680.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 52
Score = 35.0 bits (79), Expect = 0.69
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 48 YIYILYIYIYIIH-GEKLMTSDNYEEFKIYNTKLKKYKIQT 167
YI+++++ ++II G+KL + + + KIY + KKYKIQ+
Sbjct: 3 YIFLIFMLVFIIWMGKKLERNKHEKGLKIYGSVFKKYKIQS 43
>gb|AAO49696.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 1210
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 384 GSGPSSSKSIWNGFIKSSNITGDSPFNFSSTSNPVILDLSNSSLVTKSRICLLSLKAFIA 563
GSG SSS N + + SP + S ++P+ LD S SSL++ S SL ++
Sbjct: 655 GSGSSSSNYNNNTGYRYNGSYPSSPTSLSIPTSPIFLDNSQSSLLSVSN---SSLASYSP 711
Query: 564 SSSVSSI 584
SSS+S I
Sbjct: 712 SSSLSGI 718
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,798,515
Number of Sequences: 1393205
Number of extensions: 10769440
Number of successful extensions: 35765
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 32692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35234
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
