Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011268A_C01 KMC011268A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51742.1| similar to Dictyostelium discoideum (Slime mold).... 40 0.013
sp|Q23917|REGA_DICDI 3',5'-cyclic-nucleotide phosphodiesterase r... 39 0.037
pir||PQ0476 pistil extensin-like protein (clone pMG08) - common ... 39 0.037
emb|CAA78394.1| pistil extensin like protein, partial CDS [Nicot... 39 0.037
gb|ZP_00013092.1| hypothetical protein [Rhodospirillum rubrum] 39 0.037
>gb|AAO51742.1| similar to Dictyostelium discoideum (Slime mold). Nucleotide
exchange factor RasGEF E
Length = 538
Score = 40.4 bits (93), Expect = 0.013
Identities = 22/72 (30%), Positives = 37/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 327 SSFELNSNPKTQEKIPSLHN*TTTATSSTSRTTTHKTQNTKS------RSQNTNRNLETQ 488
+SF+ ++N + Q++ P++++ T TS+T+ TTT T N+ S S N N N
Sbjct: 170 NSFQSSNNRQQQQQQPTVNSNNNTTTSTTTTTTTTTTTNSTSSPSSSLASLNNNNNNNNN 229
Query: 489 TETNQAQKPKNP 524
N +P P
Sbjct: 230 NNNNNNNEPSKP 241
>sp|Q23917|REGA_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA (PDEase regA)
gi|1405368|gb|AAB03508.1| RegA
gi|3046777|emb|CAA06513.1| RegA [Dictyostelium
discoideum]
Length = 793
Score = 38.9 bits (89), Expect = 0.037
Identities = 28/108 (25%), Positives = 51/108 (46%)
Frame = +3
Query: 192 SSSISKITTSS*ILK*IIFNIFFLRLKFKENH*NSLKKQIHKSSSSSFELNSNPKTQEKI 371
SSS S S LK +I I L + K N + + +++++ N+N K ++ +
Sbjct: 22 SSSSSPSNNDSTSLKSMISGIENLNVHSKGND-----NKNNNNNNNNNNSNNNEKQKDIV 76
Query: 372 PSLHN*TTTATSSTSRTTTHKTQNTKSRSQNTNRNLETQTETNQAQKP 515
+N ++ T++T+ TTT N+ + S N N N+ N +P
Sbjct: 77 SLENNSSSNNTTTTTTTTTTSNHNSNNNSNNNNNNINNNNINNNNYEP 124
>pir||PQ0476 pistil extensin-like protein (clone pMG08) - common tobacco
(fragment)
Length = 154
Score = 38.9 bits (89), Expect = 0.037
Identities = 18/44 (40%), Positives = 22/44 (49%)
Frame = +1
Query: 343 TPTPKPRKKYPASTTEPPLQHLQRPEPPPTKPKTQSPEAKTQIE 474
+P P P K P PP Q ++P PPP P Q P AK I+
Sbjct: 86 SPPPPPAKSPPPLLPPPPSQPPKQPPPPPPPPAKQPPSAKPPIK 129
>emb|CAA78394.1| pistil extensin like protein, partial CDS [Nicotiana tabacum]
Length = 155
Score = 38.9 bits (89), Expect = 0.037
Identities = 18/44 (40%), Positives = 22/44 (49%)
Frame = +1
Query: 343 TPTPKPRKKYPASTTEPPLQHLQRPEPPPTKPKTQSPEAKTQIE 474
+P P P K P PP Q ++P PPP P Q P AK I+
Sbjct: 86 SPPPPPAKSPPPLLPPPPSQPPKQPPPPPPPPAKQPPSAKPPIK 129
>gb|ZP_00013092.1| hypothetical protein [Rhodospirillum rubrum]
Length = 671
Score = 38.9 bits (89), Expect = 0.037
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 525 WGFWVSELDLFQFVFLGFDLCFGFWTLCF--GFCGWWFW 415
W WV L +VFL F + G W + G+ GWWFW
Sbjct: 205 WARWVRPWTLVAWVFLTFGIALGSWWAYYELGWGGWWFW 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,855,373
Number of Sequences: 1393205
Number of extensions: 10176841
Number of successful extensions: 94667
Number of sequences better than 10.0: 589
Number of HSP's better than 10.0 without gapping: 51760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84110
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
