Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011258A_C01 KMC011258A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22663.1| unknown protein [Arabidopsis thaliana] 39 0.031
ref|NP_201206.1| unknown protein; protein id: At5g64010.1 [Arabi... 35 0.45
>gb|AAO22663.1| unknown protein [Arabidopsis thaliana]
Length = 236
Score = 39.3 bits (90), Expect = 0.031
Identities = 26/83 (31%), Positives = 44/83 (52%)
Frame = -1
Query: 542 AVNEAMSNLSLNLFRAFKNITCSLVKEQERSVWLTTLIAAEKAKNETLPHEYQKFQKISD 363
+ +EAM+NLSL LFRAFK+ + + V + EK K + ++ +++ + D
Sbjct: 131 SASEAMANLSLELFRAFKS-----KQHLQGEVSFSAAATDEKDKRDATYNQLERYSRKLD 185
Query: 362 SEKAGGSTNGLKKSPDKQAARDS 294
STN + SP Q+AR++
Sbjct: 186 --VMAPSTNNRQDSPANQSAREA 206
>ref|NP_201206.1| unknown protein; protein id: At5g64010.1 [Arabidopsis thaliana]
gi|8777314|dbj|BAA96904.1| gene_id:MBM17.11~unknown
protein [Arabidopsis thaliana]
Length = 245
Score = 35.4 bits (80), Expect = 0.45
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = -1
Query: 542 AVNEAMSNLSLNLFRAFKN-----------ITCSLVKEQERSVWLTTLIAAEKAKNETLP 396
+ +EAM+NLSL LFRAFK+ I CS + R + ++ K +
Sbjct: 131 SASEAMANLSLELFRAFKSKQHLQVLNTAAIVCSYSGGKSR-------LYCDQDKRDATY 183
Query: 395 HEYQKFQKISDSEKAGGSTNGLKKSPDKQAARDS 294
++ +++ + D STN + SP Q+AR++
Sbjct: 184 NQLERYSRKLD--VMAPSTNNRQDSPANQSAREA 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,231,944
Number of Sequences: 1393205
Number of extensions: 8172720
Number of successful extensions: 20606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20590
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
