Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011251A_C01 KMC011251A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus] 172 2e-42
gb|AAK29452.1|AF352249_1 histone H1 [Lathyrus sativus] 171 5e-42
gb|AAM54670.1|AF514416_1 histone H1 [Lathyrus aphaca] 169 2e-41
gb|AAM54671.1|AF514417_1 histone H1 [Pisum sativum subsp. abyssi... 169 2e-41
dbj|BAA78535.1| ribosome-sedimenting protein [Pisum sativum] 167 5e-41
>gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus]
Length = 306
Score = 172 bits (437), Expect = 2e-42
Identities = 98/152 (64%), Positives = 116/152 (75%), Gaps = 5/152 (3%)
Frame = +3
Query: 69 STEEPIA--PIIVEEPVVEEPAAAD-LPPVAED--EPAQPDPNPTKEAKPRKRSAAKKAS 233
+ E+PI P VE+P+VEEPAA D LPPV + EPA KE K +K + AK +
Sbjct: 8 AVEQPIVEEPAAVEQPIVEEPAAVDTLPPVVNEAEEPAAKPKKAPKEPKAKK-APAKPRT 66
Query: 234 HPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVK 413
HP+YEEMVK+AIV LKEKSGSSQYAIAKF+EEKHKQLPSNFKKLLL +KKLVA+GKLVK
Sbjct: 67 HPTYEEMVKEAIVALKEKSGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVK 126
Query: 414 VKNSFKLPSAKSSAAAAASRPAAAKKKPQPAA 509
VK S+KLP AKS+AA A +PAA+K K +P A
Sbjct: 127 VKASYKLP-AKSTAAKPAKKPAASKSKAKPKA 157
Score = 36.2 bits (82), Expect = 0.23
Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Frame = +3
Query: 48 AIPEAMASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEP---------AQPDPNPTKEAK 200
A P+A A+T+ P +P + AA P A+ +P A+P P K
Sbjct: 153 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVA 212
Query: 201 PRKRSAAKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHL 380
+ + AK A+ P K A AK + P+ K
Sbjct: 213 AKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPA-AKAAAPKPA 271
Query: 381 KKLVAAGKLVKVKNSFKLPSAKSSAAAAASR 473
K A K VK + K +AKS A AA++
Sbjct: 272 VKKAAPVKKTPVKAAAKAKTAKSPAKKAAAK 302
Score = 32.0 bits (71), Expect = 4.3
Identities = 39/147 (26%), Positives = 62/147 (41%), Gaps = 4/147 (2%)
Frame = +3
Query: 84 IAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPT---KEAKPRKRSAAKKASHPSYEEM 254
I ++ +V+ A+ LP A+ A+P P +AKP+ ++A K + P+ +
Sbjct: 115 IKKLVASGKLVKVKASYKLP--AKSTAAKPAKKPAASKSKAKPKAKAATKSKAKPAAK-- 170
Query: 255 VKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKL 434
A K K + AK + + K K VAA K K + K
Sbjct: 171 ---AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA--KPAKTVAAKPAAKAKPAAKP 225
Query: 435 PSAKSSAAAAASRPAA-AKKKPQPAAA 512
+A + AA ++PAA AK +PA A
Sbjct: 226 KAAAKAKPAAKAKPAAKAKPAAKPAKA 252
>gb|AAK29452.1|AF352249_1 histone H1 [Lathyrus sativus]
Length = 295
Score = 171 bits (433), Expect = 5e-42
Identities = 97/149 (65%), Positives = 115/149 (77%), Gaps = 3/149 (2%)
Frame = +3
Query: 72 TEEPIAPIIVEEPVVEEPAAAD-LPPVAED--EPAQPDPNPTKEAKPRKRSAAKKASHPS 242
+EEP + VE+P+VEEPAA D LPPV + EPA KE K +K + AK +HP+
Sbjct: 1 SEEPTT-VAVEQPIVEEPAAVDTLPPVVNEAEEPAAKPKKAPKEPKAKK-APAKPRTHPT 58
Query: 243 YEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKN 422
YEEMVK+AIV LKEKSGSSQYAIAKF+EEKHKQLPSNFKKLLL +KKLVA+GKLVKVK
Sbjct: 59 YEEMVKEAIVALKEKSGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKA 118
Query: 423 SFKLPSAKSSAAAAASRPAAAKKKPQPAA 509
S+KLP AKS+AA A +PAA+K K +P A
Sbjct: 119 SYKLP-AKSTAAKPAKKPAASKSKAKPKA 146
Score = 36.2 bits (82), Expect = 0.23
Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Frame = +3
Query: 48 AIPEAMASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEP---------AQPDPNPTKEAK 200
A P+A A+T+ P +P + AA P A+ +P A+P P K
Sbjct: 142 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVA 201
Query: 201 PRKRSAAKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHL 380
+ + AK A+ P K A AK + P+ K
Sbjct: 202 AKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPA-AKAAAPKPA 260
Query: 381 KKLVAAGKLVKVKNSFKLPSAKSSAAAAASR 473
K A K VK + K +AKS A AA++
Sbjct: 261 VKKAAPVKKTPVKAAAKAKTAKSPAKKAAAK 291
Score = 32.0 bits (71), Expect = 4.3
Identities = 39/147 (26%), Positives = 62/147 (41%), Gaps = 4/147 (2%)
Frame = +3
Query: 84 IAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPT---KEAKPRKRSAAKKASHPSYEEM 254
I ++ +V+ A+ LP A+ A+P P +AKP+ ++A K + P+ +
Sbjct: 104 IKKLVASGKLVKVKASYKLP--AKSTAAKPAKKPAASKSKAKPKAKAATKSKAKPAAK-- 159
Query: 255 VKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKL 434
A K K + AK + + K K VAA K K + K
Sbjct: 160 ---AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA--KPAKTVAAKPAAKAKPAAKP 214
Query: 435 PSAKSSAAAAASRPAA-AKKKPQPAAA 512
+A + AA ++PAA AK +PA A
Sbjct: 215 KAAAKAKPAAKAKPAAKAKPAAKPAKA 241
>gb|AAM54670.1|AF514416_1 histone H1 [Lathyrus aphaca]
Length = 298
Score = 169 bits (428), Expect = 2e-41
Identities = 94/151 (62%), Positives = 110/151 (72%), Gaps = 5/151 (3%)
Frame = +3
Query: 72 TEEPIAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPTKEAKPRKRSAAKKA-----SH 236
+EEP + VE+P+VEEP A D P +E +P P K K K AKKA +H
Sbjct: 1 SEEPTT-VAVEQPIVEEPEAVDTVPPVVNEAEEPTAKPKKAPKAPKEPKAKKAPAKPRTH 59
Query: 237 PSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKV 416
P+YEEMVK+AIV LKEKSGSSQYAIAKF+EEKHKQLPSNFKKLLL LKKLVA+GKLVKV
Sbjct: 60 PTYEEMVKEAIVALKEKSGSSQYAIAKFIEEKHKQLPSNFKKLLLVQLKKLVASGKLVKV 119
Query: 417 KNSFKLPSAKSSAAAAASRPAAAKKKPQPAA 509
K S+KLP AKS+AA A +PA +K K +P A
Sbjct: 120 KASYKLP-AKSTAAKPAKKPAGSKPKAKPKA 149
Score = 37.4 bits (85), Expect = 0.10
Identities = 38/151 (25%), Positives = 56/151 (36%), Gaps = 9/151 (5%)
Frame = +3
Query: 48 AIPEAMASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEP---------AQPDPNPTKEAK 200
A P+A A+T+ P +P + AA P A+ +P A+P P K
Sbjct: 145 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAVA 204
Query: 201 PRKRSAAKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHL 380
+ + AK A+ P K A AK + P+ +
Sbjct: 205 AKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPAAKAPAPKVAV 264
Query: 381 KKLVAAGKLVKVKNSFKLPSAKSSAAAAASR 473
KK A K VK + K +AKS A AA++
Sbjct: 265 KK-AAPVKKTPVKAAAKAKTAKSPAKKAAAK 294
Score = 30.8 bits (68), Expect = 9.6
Identities = 38/144 (26%), Positives = 61/144 (41%), Gaps = 4/144 (2%)
Frame = +3
Query: 93 IIVEEPVVEEPAAADLPPVAEDEPAQPDPNPT---KEAKPRKRSAAKKASHPSYEEMVKD 263
++ +V+ A+ LP A+ A+P P +AKP+ ++A K + P+ +
Sbjct: 110 LVASGKLVKVKASYKLP--AKSTAAKPAKKPAGSKPKAKPKAKAATKSKAKPAAK----- 162
Query: 264 AIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKLPSA 443
A K K + AK + + K K VAA K K + K +A
Sbjct: 163 AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA--KPAKAVAAKPAAKAKPAAKPKAA 220
Query: 444 KSSAAAAASRPAA-AKKKPQPAAA 512
+ AA ++PAA AK +PA A
Sbjct: 221 AKAKPAAKAKPAAKAKPAAKPAKA 244
>gb|AAM54671.1|AF514417_1 histone H1 [Pisum sativum subsp. abyssinicum]
gi|21465097|gb|AAM54672.1|AF514418_1 histone H1 [Pisum
fulvum]
Length = 295
Score = 169 bits (427), Expect = 2e-41
Identities = 92/148 (62%), Positives = 111/148 (74%), Gaps = 2/148 (1%)
Frame = +3
Query: 72 TEEPIAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPTKEAKP--RKRSAAKKASHPSY 245
+EEP + VE+P+VEEP A D P +E +P P K K K++ AK +HP+Y
Sbjct: 1 SEEPTT-VAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTY 59
Query: 246 EEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNS 425
EEMVK+AIV LKE++GSSQYAIAKF+EEKHKQLPSNFKKLLL +KKLVA+GKLVKVK S
Sbjct: 60 EEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKAS 119
Query: 426 FKLPSAKSSAAAAASRPAAAKKKPQPAA 509
+KLP AKSSAA A +PAAAK K +P A
Sbjct: 120 YKLP-AKSSAAKPAKKPAAAKSKAKPKA 146
Score = 38.1 bits (87), Expect = 0.060
Identities = 44/155 (28%), Positives = 61/155 (38%), Gaps = 3/155 (1%)
Frame = +3
Query: 48 AIPEAMASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEP---AQPDPNPTKEAKPRKRSA 218
A P+A A+T+ P +P + AA P A+ +P A+P AKP K +A
Sbjct: 142 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAA 201
Query: 219 AKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAA 398
AK A+ K K + A AK + K P+ K A
Sbjct: 202 AKPAA---------------KAKPAAKPKAAAK-AKPAAKAKPA----------AKAKPA 235
Query: 399 GKLVKVKNSFKLPSAKSSAAAAASRPAAAKKKPQP 503
K K + S ++S AAAA+ P A KK P
Sbjct: 236 AKPAKAART----STRTSPAAAAAAPKPAAKKAAP 266
Score = 31.2 bits (69), Expect = 7.4
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Frame = +3
Query: 84 IAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPT---KEAKPRKRSAAKKASHPSYEEM 254
I ++ +V+ A+ LP A+ A+P P +AKP+ ++A K + P+ +
Sbjct: 104 IKKLVASGKLVKVKASYKLP--AKSSAAKPAKKPAAAKSKAKPKAKAATKSKAKPAAK-- 159
Query: 255 VKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKL 434
A K K + AK + K P+ K + K AA K K + K
Sbjct: 160 ---AKPAAKAKPAAKAKPAAK-AKPAAKAKPAAKAKPAAKPV-KTAAAKPAAKAKPAAKP 214
Query: 435 PSAKSSAAAAASRPAA-AKKKPQPAAA 512
+A + AA ++PAA AK +PA A
Sbjct: 215 KAAAKAKPAAKAKPAAKAKPAAKPAKA 241
>dbj|BAA78535.1| ribosome-sedimenting protein [Pisum sativum]
Length = 297
Score = 167 bits (424), Expect = 5e-41
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 2/149 (1%)
Frame = +3
Query: 69 STEEPIAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPTKEAKP--RKRSAAKKASHPS 242
++EEP + VE+P+VEEP A D P +E +P P K K K++ AK +HP+
Sbjct: 2 ASEEPTT-VAVEQPIVEEPEAVDTFPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPT 60
Query: 243 YEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKN 422
YEEMVK+AIV LKE++GSSQYAIAKF+EEKHKQLPSNFKKLLL ++KLVA+GKLVKVK
Sbjct: 61 YEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIRKLVASGKLVKVKA 120
Query: 423 SFKLPSAKSSAAAAASRPAAAKKKPQPAA 509
S+KLP AKSSAA A +PAAAK K +P A
Sbjct: 121 SYKLP-AKSSAAKPAKKPAAAKSKAKPKA 148
Score = 38.1 bits (87), Expect = 0.060
Identities = 44/155 (28%), Positives = 61/155 (38%), Gaps = 3/155 (1%)
Frame = +3
Query: 48 AIPEAMASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEP---AQPDPNPTKEAKPRKRSA 218
A P+A A+T+ P +P + AA P A+ +P A+P AKP K +A
Sbjct: 144 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAA 203
Query: 219 AKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAA 398
AK A+ K K + A AK + K P+ K A
Sbjct: 204 AKPAA---------------KAKPAAKPKAAAK-AKPAAKAKPA----------AKAKPA 237
Query: 399 GKLVKVKNSFKLPSAKSSAAAAASRPAAAKKKPQP 503
K K + S ++S AAAA+ P A KK P
Sbjct: 238 AKPAKAART----STRTSPAAAAAAPKPAAKKAAP 268
Score = 31.2 bits (69), Expect = 7.4
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Frame = +3
Query: 84 IAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPT---KEAKPRKRSAAKKASHPSYEEM 254
I ++ +V+ A+ LP A+ A+P P +AKP+ ++A K + P+ +
Sbjct: 106 IRKLVASGKLVKVKASYKLP--AKSSAAKPAKKPAAAKSKAKPKAKAATKSKAKPAAK-- 161
Query: 255 VKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKL 434
A K K + AK + K P+ K + K AA K K + K
Sbjct: 162 ---AKPAAKAKPAAKAKPAAK-AKPAAKAKPAAKAKPAAKPV-KTAAAKPAAKAKPAAKP 216
Query: 435 PSAKSSAAAAASRPAA-AKKKPQPAAA 512
+A + AA ++PAA AK +PA A
Sbjct: 217 KAAAKAKPAAKAKPAAKAKPAAKPAKA 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,702,377
Number of Sequences: 1393205
Number of extensions: 11245854
Number of successful extensions: 106189
Number of sequences better than 10.0: 1487
Number of HSP's better than 10.0 without gapping: 76398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100301
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
