Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011233A_C01 KMC011233A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10199.1| hypothetical protein~similar to Arabidopsis thal... 155 3e-37
ref|NP_565766.1| expressed protein; protein id: At2g33470.1, sup... 144 8e-34
dbj|BAB01718.1| gene_id:MXL8.12~unknown protein [Arabidopsis tha... 62 4e-09
ref|NP_566679.1| expressed protein; protein id: At3g21260.1, sup... 62 4e-09
gb|AAM63652.1| unknown [Arabidopsis thaliana] 62 7e-09
>dbj|BAC10199.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 2,
At2g33470 [Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 155 bits (392), Expect = 3e-37
Identities = 68/92 (73%), Positives = 80/92 (86%)
Frame = -3
Query: 568 FQNLLDHEDWSMSQACTDAYTKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVLQGGGDIK 389
F NL+ H DW MSQAC+DAY+KTLKKWHGWLASSSF+VA+KLAPDRKKFME++ G GDI
Sbjct: 111 FHNLVQHPDWQMSQACSDAYSKTLKKWHGWLASSSFSVAIKLAPDRKKFMEIISGSGDIN 170
Query: 388 TDIQQFCTTFSPLLEENHKFLARFGLDDMKAS 293
DI++FC TFSPLL ENH+FLA G+DD+KAS
Sbjct: 171 ADIEKFCATFSPLLAENHRFLASVGMDDLKAS 202
>ref|NP_565766.1| expressed protein; protein id: At2g33470.1, supported by cDNA:
19302. [Arabidopsis thaliana] gi|25408274|pir||H84745
hypothetical protein At2g33470 [imported] - Arabidopsis
thaliana gi|2459429|gb|AAB80664.1| expressed protein
[Arabidopsis thaliana] gi|21554015|gb|AAM63096.1|
unknown [Arabidopsis thaliana]
gi|28393611|gb|AAO42225.1| unknown protein [Arabidopsis
thaliana] gi|28973539|gb|AAO64094.1| unknown protein
[Arabidopsis thaliana]
Length = 202
Score = 144 bits (363), Expect = 8e-34
Identities = 61/92 (66%), Positives = 78/92 (84%)
Frame = -3
Query: 568 FQNLLDHEDWSMSQACTDAYTKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVLQGGGDIK 389
F+NL+ H+DWSM QAC D+Y KTLKKWHGWLASS+F++A+KLAPDRKKFM+V+ G G+I+
Sbjct: 111 FRNLVAHQDWSMPQACADSYQKTLKKWHGWLASSTFSMALKLAPDRKKFMDVISGSGNIQ 170
Query: 388 TDIQQFCTTFSPLLEENHKFLARFGLDDMKAS 293
D+++FC F P L +NHKFLA G+DDMKAS
Sbjct: 171 ADMERFCAEFGPFLHDNHKFLASVGMDDMKAS 202
>dbj|BAB01718.1| gene_id:MXL8.12~unknown protein [Arabidopsis thaliana]
Length = 233
Score = 62.4 bits (150), Expect = 4e-09
Identities = 30/94 (31%), Positives = 50/94 (52%), Gaps = 4/94 (4%)
Frame = -3
Query: 565 QNLLDHEDWSMSQACTDAYTKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVLQGGGD--- 395
Q L+ +M QA + Y T+K WHGW++S++F VA+KL P+ F+ VL +
Sbjct: 139 QRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAAFKVALKLVPNNNTFINVLAAKDETHQ 198
Query: 394 -IKTDIQQFCTTFSPLLEENHKFLARFGLDDMKA 296
++ DI + PLL + H L + + +K+
Sbjct: 199 MVQDDITSLISLLIPLLSQLHSILELYEVSKLKS 232
>ref|NP_566679.1| expressed protein; protein id: At3g21260.1, supported by cDNA:
260109. [Arabidopsis thaliana]
Length = 144
Score = 62.4 bits (150), Expect = 4e-09
Identities = 30/94 (31%), Positives = 50/94 (52%), Gaps = 4/94 (4%)
Frame = -3
Query: 565 QNLLDHEDWSMSQACTDAYTKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVLQGGGD--- 395
Q L+ +M QA + Y T+K WHGW++S++F VA+KL P+ F+ VL +
Sbjct: 50 QRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAAFKVALKLVPNNNTFINVLAAKDETHQ 109
Query: 394 -IKTDIQQFCTTFSPLLEENHKFLARFGLDDMKA 296
++ DI + PLL + H L + + +K+
Sbjct: 110 MVQDDITSLISLLIPLLSQLHSILELYEVSKLKS 143
>gb|AAM63652.1| unknown [Arabidopsis thaliana]
Length = 144
Score = 61.6 bits (148), Expect = 7e-09
Identities = 30/94 (31%), Positives = 49/94 (51%), Gaps = 4/94 (4%)
Frame = -3
Query: 565 QNLLDHEDWSMSQACTDAYTKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVLQGGGD--- 395
Q L+ +M QA + Y T+K WHGW++S++F VA+KL P F+ VL +
Sbjct: 50 QRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAAFKVALKLVPKNNTFINVLAAKDETHQ 109
Query: 394 -IKTDIQQFCTTFSPLLEENHKFLARFGLDDMKA 296
++ DI + PLL + H L + + +K+
Sbjct: 110 MVQDDITSLISLLIPLLSQLHSILELYEVSKLKS 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,473,055
Number of Sequences: 1393205
Number of extensions: 9797638
Number of successful extensions: 25550
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 24350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25522
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
