Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011217A_C01 KMC011217A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187569.1| putative oxidoreductase; protein id: At3g09580.... 183 1e-45
dbj|BAC07074.1| similar to oxidoreductase [Oryza sativa (japonic... 170 9e-42
ref|NP_626444.1| putative oxidoreductase [Streptomyces coelicolo... 61 1e-08
ref|NP_624527.1| putative oxidoreductase [Streptomyces coelicolo... 60 1e-08
ref|NP_279585.1| Vng0542c [Halobacterium sp. NRC-1] gi|25409473|... 55 7e-07
>ref|NP_187569.1| putative oxidoreductase; protein id: At3g09580.1, supported by
cDNA: 17350., supported by cDNA: gi_17381087
[Arabidopsis thaliana]
gi|6682237|gb|AAF23289.1|AC016661_14 putative
oxidoreductase [Arabidopsis thaliana]
gi|17381088|gb|AAL36356.1| putative oxidoreductase
[Arabidopsis thaliana] gi|21436243|gb|AAM51260.1|
putative oxidoreductase [Arabidopsis thaliana]
Length = 477
Score = 183 bits (464), Expect = 1e-45
Identities = 85/120 (70%), Positives = 101/120 (83%)
Frame = -1
Query: 541 GIVNNMFLXTNVARSYGPPDKALVSVSLIGLFEGESDDELVGKVVQELSGWFGEKMVREW 362
GI+NNMF TNVAR+Y PP KALVSVSLIGLFE +DD+L +V++ELSGWFGE V W
Sbjct: 353 GIINNMFFATNVARTYAPPGKALVSVSLIGLFEDRTDDDLAAEVLRELSGWFGESPVMSW 412
Query: 361 KHLRTYRVGFAQPNQAPPTDPMKNPRIESGLYVCGDYLTSATFDGALVSGRRAAESLLKD 182
KHL+TYR+ FAQPNQ PPTD +K+PR+ SGLY+ GDY+TSATFDGALVSGRRA E LL++
Sbjct: 413 KHLKTYRIQFAQPNQCPPTDLVKSPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLRE 472
>dbj|BAC07074.1| similar to oxidoreductase [Oryza sativa (japonica cultivar-group)]
Length = 473
Score = 170 bits (431), Expect = 9e-42
Identities = 82/123 (66%), Positives = 96/123 (77%), Gaps = 1/123 (0%)
Frame = -1
Query: 544 KGIVNNMFLXTNVARSYGPPDKALVSVSLIGLFEGESDDELVGKVVQELSGWFGEKMVRE 365
KGIVNNMF TNVA SY PP ++LVSVSL+G F G SD +L G+VV EL+GWFG V
Sbjct: 346 KGIVNNMFFATNVAPSYAPPGRSLVSVSLVGSFAGRSDADLAGEVVTELAGWFGAGEVAS 405
Query: 364 WKHLRTYRVGFAQPNQAPPTDPM-KNPRIESGLYVCGDYLTSATFDGALVSGRRAAESLL 188
W HLRTYR+GFAQP+Q PPT P ++PR+ GLY+CGD+ ATFDGALVSGRRAAE+L
Sbjct: 406 WTHLRTYRIGFAQPDQTPPTSPAGRDPRVGDGLYMCGDHWCYATFDGALVSGRRAAEALA 465
Query: 187 KDR 179
KDR
Sbjct: 466 KDR 468
>ref|NP_626444.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
gi|7481101|pir||T35307 probable oxidoreductase -
Streptomyces coelicolor gi|5578873|emb|CAB51275.1|
putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 467
Score = 60.8 bits (146), Expect = 1e-08
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = -1
Query: 514 TNVARSYGPPDKALVSVSLIGLFEGESDDELVGKVVQELSGWFGEKMVREWKHLRTYRVG 335
+ V S P + LVS +++G +L V LS +G R W+ L +
Sbjct: 343 SQVDPSRAPAGRTLVSSTVLG----PPPPDLDTAVRIHLSRLYGTPTTR-WETLAVHHTP 397
Query: 334 FAQPNQAPPTDPMKNPRIESGLYVCGDYLTSATFDGALVSGRRAAESLLKD 182
A P PP DP + R+ +GLYVCGD+ ++T GAL SG RA+ ++L+D
Sbjct: 398 EAVPAMRPPHDPRRPVRLLAGLYVCGDHRDTSTAQGALHSGHRASAAILRD 448
>ref|NP_624527.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
gi|7481130|pir||T37023 probable oxidoreductase -
Streptomyces coelicolor gi|5777667|emb|CAB53416.1|
putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 416
Score = 60.5 bits (145), Expect = 1e-08
Identities = 39/121 (32%), Positives = 56/121 (46%)
Frame = -1
Query: 541 GIVNNMFLXTNVARSYGPPDKALVSVSLIGLFEGESDDELVGKVVQELSGWFGEKMVREW 362
G + N + + VA +Y PP LVS S++G V++ L+ +G W
Sbjct: 297 GAILNTCVLSQVAPTYAPPGTGLVSTSVLGT----DPPGRAQAVLRRLAELYGTD-TSGW 351
Query: 361 KHLRTYRVGFAQPNQAPPTDPMKNPRIESGLYVCGDYLTSATFDGALVSGRRAAESLLKD 182
+ + V A P PP + RI G YVCGD+ + + GAL SG RAA + D
Sbjct: 352 EQVAARTVDGALPAMLPPWPLSRTTRIGPGRYVCGDHRATGSVQGALASGTRAAREVRAD 411
Query: 181 R 179
R
Sbjct: 412 R 412
>ref|NP_279585.1| Vng0542c [Halobacterium sp. NRC-1] gi|25409473|pir||E84212
hypothetical protein Vng0542c [imported] - Halobacterium
sp. NRC-1 gi|10580141|gb|AAG19065.1| Vng0542c
[Halobacterium sp. NRC-1]
Length = 430
Score = 54.7 bits (130), Expect = 7e-07
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Frame = -1
Query: 538 IVNNMFLXTNVARSYGPPDKALVSVSLIGLFEGESDDELVGKVVQELSGWFGEKMVREWK 359
+ N + + VA Y P D+ LV+V+ +G + S L ++ W+ E + ++
Sbjct: 309 VPNTVAPMSGVAPEYAPDDRELVAVTTLGTPD-RSSTALATAARDAIADWYPEASLGAFE 367
Query: 358 HLRTYRVGFAQPNQAPPT-DPMKNPRIESG-LYVCGDYLTSATFDGALVSGRRAAESLLK 185
L T+RV F+Q Q P D + + +G +YV G Y +A+ +GA+ SGR AA +
Sbjct: 368 VLHTHRVPFSQFAQPPGVHDTLPDTTAPAGAVYVAGSYTHNASINGAMESGRAAARA-AS 426
Query: 184 DRVS 173
D VS
Sbjct: 427 DHVS 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,934,194
Number of Sequences: 1393205
Number of extensions: 12121674
Number of successful extensions: 38421
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 35146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38154
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
