Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011214A_C01 KMC011214A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG53636.1|AF291712_1 initiation factor 3g [Arabidopsis thali... 228 5e-59
ref|NP_187747.1| eukaryotic translation initiation factor 3 subu... 226 2e-58
ref|NP_196219.1| eukaryotic translation initiation factor 3 subu... 192 3e-48
gb|AAL62399.1| eukaryotic translation initiation factor 3 subuni... 156 2e-37
gb|AAH49046.1| Similar to eukaryotic translation initiation fact... 88 8e-17
>gb|AAG53636.1|AF291712_1 initiation factor 3g [Arabidopsis thaliana]
gi|21593472|gb|AAM65439.1| putative eukaryotic
translation initiation factor 3 subunit [Arabidopsis
thaliana]
Length = 294
Score = 228 bits (580), Expect = 5e-59
Identities = 110/162 (67%), Positives = 131/162 (79%), Gaps = 4/162 (2%)
Frame = +2
Query: 83 QVQGKMRWGELEEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTR 262
Q K RWGE++E+D D DFLLPPKQVIGPDENG+K IEYKF+D+GNKVKITT TR R
Sbjct: 7 QKTSKFRWGEMDEDD--DFDFLLPPKQVIGPDENGLKTTIEYKFNDEGNKVKITTRTRVR 64
Query: 263 KLANARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGAKTEEPKASGD 442
KLA+ARL+KRA+ERR+WPKFGDA +E+ G+ LTMVSTEEILLERP+ G K +E KA+GD
Sbjct: 65 KLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKATGD 124
Query: 443 PFQK----GAVLMVCRTCGKKGDHWTSRCPYKDLAQLSEGFV 556
+ GAVLMVCR C KKGDHWTS+CPYKDLA ++ F+
Sbjct: 125 GLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFI 166
>ref|NP_187747.1| eukaryotic translation initiation factor 3 subunit g (eIF3g);
protein id: At3g11400.1, supported by cDNA: 39231.,
supported by cDNA: gi_12407750, supported by cDNA:
gi_16226340, supported by cDNA: gi_18377869 [Arabidopsis
thaliana] gi|9755847|emb|CAC01929.1| translation
initiation factor 3, subunit g (eIF3g) [Arabidopsis
thaliana] gi|12322907|gb|AAG51445.1|AC008153_18 putative
eukaryotic translation initiation factor 3 subunit;
21071-22901 [Arabidopsis thaliana]
gi|16226341|gb|AAL16140.1|AF428308_1 AT3g11400/F24K9_7
[Arabidopsis thaliana] gi|18377870|gb|AAL67121.1|
AT3g11400/F24K9_7 [Arabidopsis thaliana]
gi|22137220|gb|AAM91455.1| AT3g11400/F24K9_7
[Arabidopsis thaliana]
Length = 294
Score = 226 bits (575), Expect = 2e-58
Identities = 110/162 (67%), Positives = 131/162 (79%), Gaps = 4/162 (2%)
Frame = +2
Query: 83 QVQGKMRWGELEEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTR 262
Q K RWGE++E+ EDLDFLLPPKQVIGPDENG+K IEYKF+D+ NKVKITT TR R
Sbjct: 7 QKTSKFRWGEMDED--EDLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRTRVR 64
Query: 263 KLANARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGAKTEEPKASGD 442
KLA+ARL+KRA+ERR+WPKFGDA +E+ G+ LTMVSTEEILLERP+ G K +E KA+GD
Sbjct: 65 KLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKATGD 124
Query: 443 PFQK----GAVLMVCRTCGKKGDHWTSRCPYKDLAQLSEGFV 556
+ GAVLMVCR C KKGDHWTS+CPYKDLA ++ F+
Sbjct: 125 GLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFI 166
>ref|NP_196219.1| eukaryotic translation initiation factor 3 subunit, putative;
protein id: At5g06000.1 [Arabidopsis thaliana]
gi|10177573|dbj|BAB10805.1| eukaryotic translation
initiation factor 3 subunit-like protein [Arabidopsis
thaliana]
Length = 308
Score = 192 bits (487), Expect = 3e-48
Identities = 96/155 (61%), Positives = 118/155 (75%), Gaps = 4/155 (2%)
Frame = +2
Query: 95 KMRWGELEEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLAN 274
K+RWGE++EE+G D DFLLPPKQ+I PD+NG+KKVIEYKF+++ KVKITTTTR +K A
Sbjct: 11 KLRWGEIDEEEG-DYDFLLPPKQMISPDQNGVKKVIEYKFNEEDKKVKITTTTRVQKRA- 68
Query: 275 ARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGAKTEEPKASGDPFQK 454
L+K+AVERRSW KFGDA HE+ + LTM STE+I+LER + G+ E+ SGD +
Sbjct: 69 --LTKQAVERRSWNKFGDAAHEESSSYLTMRSTEDIILERIRAPGSNAEQSTVSGDSMSQ 126
Query: 455 ----GAVLMVCRTCGKKGDHWTSRCPYKDLAQLSE 547
GAVLMVCR C KKGDHWTSRCP KDL L +
Sbjct: 127 LGKPGAVLMVCRLCQKKGDHWTSRCPQKDLLSLMD 161
>gb|AAL62399.1| eukaryotic translation initiation factor 3 subunit-like protein
[Arabidopsis thaliana] gi|25083939|gb|AAN72138.1|
eukaryotic translation initiation factor 3 subunit-like
protein [Arabidopsis thaliana]
Length = 276
Score = 156 bits (394), Expect = 2e-37
Identities = 79/132 (59%), Positives = 97/132 (72%), Gaps = 4/132 (3%)
Frame = +2
Query: 164 VIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHED 343
+I PD+NG+KKVIEYKF+++ KVKITTTTR +K A L+K+AVERRSW KFGDA HE+
Sbjct: 1 MISPDQNGVKKVIEYKFNEEDKKVKITTTTRVQKRA---LTKQAVERRSWNKFGDAAHEE 57
Query: 344 VGARLTMVSTEEILLERPKPLGAKTEEPKASGDPFQK----GAVLMVCRTCGKKGDHWTS 511
+ LTM STE+I+LER + G+ E+ SGD + GAVLMVCR C KKGDHWTS
Sbjct: 58 SSSYLTMRSTEDIILERIRAPGSNAEQSTVSGDSMSQLGKPGAVLMVCRLCQKKGDHWTS 117
Query: 512 RCPYKDLAQLSE 547
RCP KDL L +
Sbjct: 118 RCPQKDLLSLMD 129
>gb|AAH49046.1| Similar to eukaryotic translation initiation factor 3, subunit 4
delta, 44kDa [Danio rerio]
Length = 293
Score = 87.8 bits (216), Expect = 8e-17
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Frame = +2
Query: 95 KMRWGELEEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLAN 274
K W + EE+G++ P + V G IK V EYK DDDG K KI RT K+
Sbjct: 10 KPSWADQVEEEGDEGSLPSPKETVKG----NIKTVTEYKIDDDGQKFKII---RTFKIET 62
Query: 275 ARLSKRAVERRSWPKFGDAVHEDVGARL--TMVSTEEIL--LERPKPLGAKTEEPKASGD 442
+ SK R++W KFG++ ++ G + T VS + + + + L A+ ++ D
Sbjct: 63 RKASKAVARRKNWKKFGNSEYDAPGPNVATTTVSDDVFMTFISSKEDLNAQDQDE----D 118
Query: 443 PFQK--GAVLMVCRTCGKKGDHWTSRCPYKD 529
P K G ++ CR C KGDHWT+RCPYKD
Sbjct: 119 PMNKLEGQKIVSCRIC--KGDHWTTRCPYKD 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,097,784
Number of Sequences: 1393205
Number of extensions: 12578671
Number of successful extensions: 63604
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 53259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62311
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
