Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011212A_C01 KMC011212A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03425.1| unnamed protein product [Oryza sativa (japonica ... 196 1e-49
ref|NP_174753.1| hyoscyamine 6-dioxygenase hydroxylase, putative... 189 2e-47
ref|NP_190232.1| putative protein; protein id: At3g46480.1 [Arab... 171 6e-42
emb|CAB96197.1| hypothetical protein [Capsella rubella] 165 2e-40
emb|CAB96198.1| hypothetical protein [Capsella rubella] 162 2e-39
>dbj|BAB03425.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711833|dbj|BAB07932.1| P0512G09.14 [Oryza sativa
(japonica cultivar-group)]
Length = 304
Score = 196 bits (499), Expect = 1e-49
Identities = 91/121 (75%), Positives = 106/121 (87%)
Frame = -2
Query: 505 YGLITLLATDDVPGLQICKDKDSKPQIWEDVAPLKGAFIVNLGDMLERWSNCIFKSTLHR 326
YGLITLLATDDV GLQ D++++PQ+WE VAP+KG FIVNLGDMLERWSNCIF+STLHR
Sbjct: 182 YGLITLLATDDVVGLQ---DRNAQPQVWEYVAPVKGGFIVNLGDMLERWSNCIFRSTLHR 238
Query: 325 VIGNGRERYSIAYFLEPGHDCLVECLPTCKSANNPPRFPPIYYRDYLSQRYKDTHADLLV 146
V+ +GRER+SIA+F+EP HDC+VECLPTCKS +NPP+FPPI YLSQRYKDTHADL
Sbjct: 239 VVLDGRERHSIAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADLTA 298
Query: 145 Y 143
Y
Sbjct: 299 Y 299
>ref|NP_174753.1| hyoscyamine 6-dioxygenase hydroxylase, putative; protein id:
At1g35190.1, supported by cDNA: 2551., supported by
cDNA: gi_13926296 [Arabidopsis thaliana]
gi|25285682|pir||G86472 probable hyoscyamine
6-dioxygenase hydroxylase [imported] - Arabidopsis
thaliana gi|12320957|gb|AAG50602.1|AC079605_7
hyoscyamine 6-dioxygenase hydroxylase, putative
[Arabidopsis thaliana]
Length = 329
Score = 189 bits (479), Expect = 2e-47
Identities = 85/123 (69%), Positives = 104/123 (84%)
Frame = -2
Query: 505 YGLITLLATDDVPGLQICKDKDSKPQIWEDVAPLKGAFIVNLGDMLERWSNCIFKSTLHR 326
+G++TLLATD V GLQICKDK++ PQ WE V P+KGAFIVNLGDMLERWSN FKSTLHR
Sbjct: 205 FGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHR 264
Query: 325 VIGNGRERYSIAYFLEPGHDCLVECLPTCKSANNPPRFPPIYYRDYLSQRYKDTHADLLV 146
V+GNG+ERYSI +F+EP HDCLVECLPTCKS + P++PPI YL+QRY++THA+L +
Sbjct: 265 VLGNGQERYSIPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTYLTQRYEETHANLSI 324
Query: 145 YQK 137
Y +
Sbjct: 325 YHQ 327
>ref|NP_190232.1| putative protein; protein id: At3g46480.1 [Arabidopsis thaliana]
gi|11255898|pir||T45705 hypothetical protein F18L15.200
- Arabidopsis thaliana gi|6522627|emb|CAB62039.1|
putative protein [Arabidopsis thaliana]
Length = 297
Score = 171 bits (432), Expect = 6e-42
Identities = 78/123 (63%), Positives = 100/123 (80%)
Frame = -2
Query: 505 YGLITLLATDDVPGLQICKDKDSKPQIWEDVAPLKGAFIVNLGDMLERWSNCIFKSTLHR 326
YG++TLLATD V GLQ DKD KP+ WE V +KGA+IVNLGD+LERWSN IFKSTLHR
Sbjct: 177 YGMLTLLATDSVTGLQ---DKDVKPRKWEYVPSIKGAYIVNLGDLLERWSNGIFKSTLHR 233
Query: 325 VIGNGRERYSIAYFLEPGHDCLVECLPTCKSANNPPRFPPIYYRDYLSQRYKDTHADLLV 146
V+GNG++RYSI +F+EP HDCLVECLPTC+S NN P++P I +L+QRY+ +H +L +
Sbjct: 234 VLGNGQDRYSIPFFIEPSHDCLVECLPTCQSENNLPKYPAIKCSTFLTQRYQQSHVNLSI 293
Query: 145 YQK 137
Y++
Sbjct: 294 YKQ 296
>emb|CAB96197.1| hypothetical protein [Capsella rubella]
Length = 315
Score = 165 bits (418), Expect = 2e-40
Identities = 68/116 (58%), Positives = 96/116 (82%)
Frame = -2
Query: 505 YGLITLLATDDVPGLQICKDKDSKPQIWEDVAPLKGAFIVNLGDMLERWSNCIFKSTLHR 326
YG+ITLLATD VPGLQ+C+DKD +P++WEDVA +KGAF+VN+GD++ERW+N +F+ST+HR
Sbjct: 194 YGMITLLATDGVPGLQVCRDKDKEPKVWEDVAGVKGAFVVNIGDLMERWTNGLFRSTMHR 253
Query: 325 VIGNGRERYSIAYFLEPGHDCLVECLPTCKSANNPPRFPPIYYRDYLSQRYKDTHA 158
V+ G+ERYS+A F++P +C+VECL +C S +PPRFPP+ +DY +R+ T A
Sbjct: 254 VVSVGKERYSVAVFVDPDPNCVVECLESCCSETSPPRFPPVRTKDYFHERFSQTLA 309
>emb|CAB96198.1| hypothetical protein [Capsella rubella]
Length = 315
Score = 162 bits (411), Expect = 2e-39
Identities = 68/116 (58%), Positives = 94/116 (80%)
Frame = -2
Query: 505 YGLITLLATDDVPGLQICKDKDSKPQIWEDVAPLKGAFIVNLGDMLERWSNCIFKSTLHR 326
YG++TLLATD VPGLQ+C+DKD +P++WEDVA +KGAF+VN+GD++ERW+N +F+ST+HR
Sbjct: 194 YGMLTLLATDGVPGLQVCRDKDKEPRVWEDVAGIKGAFLVNIGDLMERWTNGLFRSTMHR 253
Query: 325 VIGNGRERYSIAYFLEPGHDCLVECLPTCKSANNPPRFPPIYYRDYLSQRYKDTHA 158
V+ G+ERYS+A F +P + +VECL +C S +PPRFPPI RDY +R+ T A
Sbjct: 254 VVSVGKERYSVAVFFDPDPNSVVECLESCCSETSPPRFPPIRTRDYFHERFSQTFA 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,455,225
Number of Sequences: 1393205
Number of extensions: 8929955
Number of successful extensions: 21999
Number of sequences better than 10.0: 624
Number of HSP's better than 10.0 without gapping: 20920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21508
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
