Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011185A_C01 KMC011185A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB44728.1| XFD-12 protein [Xenopus laevis] gi|5713121|gb|AA... 35 0.42
ref|NP_593712.1| hypothetical Myb-like DNA-binding protein [Schi... 33 2.1
ref|XP_239466.1| hypothetical protein XP_239466 [Rattus norvegicus] 33 2.7
gb|AAF65409.1|AF238313_1 developmental protein DG1037 [Dictyoste... 33 2.7
ref|XP_223050.1| similar to proline-rich protein precursor - kid... 32 3.6
>emb|CAB44728.1| XFD-12 protein [Xenopus laevis] gi|5713121|gb|AAD47811.1|AF162782_1
winged helix protein [Xenopus laevis]
Length = 352
Score = 35.4 bits (80), Expect = 0.42
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = -2
Query: 253 PNNSQGKISPFPSTINSSPSEPEKNLSTVTNFSTFHHQ-NSPSPCFLHPPCLFSMTFNP 80
PNNSQ K S I P EPE N+ + + ++H PS C L P + +++ P
Sbjct: 276 PNNSQSKCSFSIENIMRKPKEPEPNIQSFNSHWNYNHVFQRPSSCLL--PAVLNLSTGP 332
>ref|NP_593712.1| hypothetical Myb-like DNA-binding protein [Schizosaccharomyces
pombe] gi|1723454|sp|Q10274|YD3A_SCHPO Hypothetical
protein C13G7.10 in chromosome I gi|2130232|pir||S67439
hypothetical protein SPAC13G7.10 - fission yeast
(Schizosaccharomyces pombe) gi|1204177|emb|CAA93598.1|
hypothetical Myb-like DNA-binding protein
[Schizosaccharomyces pombe]
Length = 390
Score = 33.1 bits (74), Expect = 2.1
Identities = 26/78 (33%), Positives = 33/78 (41%), Gaps = 1/78 (1%)
Frame = -2
Query: 364 DHTLSQSTCFHLLHSSSQNREL*IQSS*SMPIF*PGSPNNSQGKISPFPSTINSSPSEPE 185
+HTL + L S+ Q L P SP+ SQ + PFP +I P E
Sbjct: 299 NHTLQSFHPYESLFSAGQPPSL------------PISPSTSQNSVQPFPFSIQQPPLHLE 346
Query: 184 KNLSTVT-NFSTFHHQNS 134
LS+ T N ST NS
Sbjct: 347 PPLSSNTLNSSTLPQPNS 364
>ref|XP_239466.1| hypothetical protein XP_239466 [Rattus norvegicus]
Length = 171
Score = 32.7 bits (73), Expect = 2.7
Identities = 17/57 (29%), Positives = 32/57 (55%)
Frame = -3
Query: 465 KLNTCNPLLT*RDETMTSKKSINKDCITISDSHLTTLFLNQHASIFYTLPHKIGNYE 295
K ++CN + T + + ++SK+S+N + T S SH L Q + Y+ H + ++E
Sbjct: 76 KASSCNEIYTSKHKCVSSKRSVNIEDSTSSRSHYKVL---QSGKVLYSKQHVLCHHE 129
>gb|AAF65409.1|AF238313_1 developmental protein DG1037 [Dictyostelium discoideum]
Length = 609
Score = 32.7 bits (73), Expect = 2.7
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 6/49 (12%)
Frame = -2
Query: 220 PSTINSSPSEPEKNLSTV------TNFSTFHHQNSPSPCFLHPPCLFSM 92
P T+NSSPS P V N ++ ++ N+PSP PP FS+
Sbjct: 299 PQTVNSSPSSPYSTRKIVINGGGSPNTNSGNNNNNPSPSKQQPPHSFSL 347
>ref|XP_223050.1| similar to proline-rich protein precursor - kidney bean [Rattus
norvegicus] gi|27681009|ref|XP_223126.1| similar to
proline-rich protein precursor - kidney bean [Rattus
norvegicus]
Length = 264
Score = 32.3 bits (72), Expect = 3.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 253 PNNSQGKISPFPSTINSSPSEPEKNLSTVTNFSTFHHQNSPSP-CFLHPP 107
P N G PF +SS S +T FHH + PSP C HPP
Sbjct: 9 PLNIPGCSGPFAKNTDSSCSSQMGPTVLLTAVFNFHHLHLPSPICTCHPP 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,191,285
Number of Sequences: 1393205
Number of extensions: 9854564
Number of successful extensions: 25235
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25031
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
