Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011179A_C01 KMC011179A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] 136 1e-31
dbj|BAB01919.1| emb|CAA64867.1~gene_id:MMM17.12~similar to unkno... 122 3e-27
ref|NP_187983.1| RNA-binding protein mec-8, putative; protein id... 120 8e-27
gb|AAO37215.1| hypothetical protein [Arabidopsis thaliana] 79 4e-14
ref|NP_492508.1| MEChanosensory abnormality MEC-8, RNA recogniti... 78 6e-14
>dbj|BAC42069.1| unknown protein [Arabidopsis thaliana]
Length = 287
Score = 136 bits (343), Expect = 1e-31
Identities = 65/84 (77%), Positives = 75/84 (88%)
Frame = -1
Query: 538 CSTLFIANLGPNCTEDELKQALSVYTGFNMVQMRSRGGMPVAFADFEEIDQATKVLEELQ 359
CSTLFIANLGPNCTEDELKQ LS Y GF+++++R+RGGMPVAFADFEEI+QAT + LQ
Sbjct: 204 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 263
Query: 358 GSSLPSSDRGGMHIEYARSKMRKR 287
G+ L SSDRGGMHIEYARSKMRK+
Sbjct: 264 GNLLSSSDRGGMHIEYARSKMRKQ 287
Score = 41.6 bits (96), Expect = 0.006
Identities = 27/88 (30%), Positives = 38/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 544 GPCSTLFIANLGPNCTEDELKQALSVYTGFNMVQMR--SRGGMPVAFADFEEIDQATKVL 371
G +TLF++ L + E+ GF Q++ RG VAFA F A +
Sbjct: 34 GAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQVVAFATFTSHRFALAAM 93
Query: 370 EELQGSSLPSSDRGGMHIEYARSKMRKR 287
EL G +HIE ARS R++
Sbjct: 94 NELNGVKFDPQTGSNLHIELARSNSRRK 121
>dbj|BAB01919.1| emb|CAA64867.1~gene_id:MMM17.12~similar to unknown protein
[Arabidopsis thaliana]
Length = 271
Score = 122 bits (306), Expect = 3e-27
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = -1
Query: 538 CSTLFIANLGPNCTEDELKQALSVYTGFNMVQMRSRGGMPVAFADFEEIDQATKVLEELQ 359
CSTLFIANLGPNCTEDELKQ LS Y GF+++++R+RGGMPVAFADFEEI+QAT + LQ
Sbjct: 179 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 238
Query: 358 GSSLPSSDRGGMHIEY 311
G+ L SSDRGGMHI+Y
Sbjct: 239 GNLLSSSDRGGMHIDY 254
>ref|NP_187983.1| RNA-binding protein mec-8, putative; protein id: At3g13700.1
[Arabidopsis thaliana]
Length = 296
Score = 120 bits (302), Expect = 8e-27
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = -1
Query: 538 CSTLFIANLGPNCTEDELKQALSVYTGFNMVQMRSRGGMPVAFADFEEIDQATKVLEELQ 359
CSTLFIANLGPNCTEDELKQ LS Y GF+++++R+RGGMPVAFADFEEI+QAT + LQ
Sbjct: 222 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 281
Query: 358 GSSLPSSDRGGMHIE 314
G+ L SSDRGGMHIE
Sbjct: 282 GNLLSSSDRGGMHIE 296
>gb|AAO37215.1| hypothetical protein [Arabidopsis thaliana]
Length = 277
Score = 79.0 bits (193), Expect = 4e-14
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = -1
Query: 541 PCSTLFIANLGPNCTEDELKQALSVYTGFNMVQMRSRGGMPVAFADFEEIDQATKVLEEL 362
PC TLFIAN+GPNCTE EL Q S GF ++++ G PVAF DF+++ +++ L L
Sbjct: 188 PCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTL 247
Query: 361 QGSSLPSSDRGG-MHIEYARSKMRKR*K 281
QG+ L SS G + ++YARS+M R K
Sbjct: 248 QGTVLYSSLTGEVLRLQYARSRMGMRKK 275
Score = 40.8 bits (94), Expect = 0.011
Identities = 23/83 (27%), Positives = 37/83 (43%), Gaps = 1/83 (1%)
Frame = -1
Query: 532 TLFIANLGPNCTEDELKQALSVYTGFNMVQMRSR-GGMPVAFADFEEIDQATKVLEELQG 356
TLF+A L + E+ + G+ +RS G P AFA F ++ A V+ L G
Sbjct: 36 TLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Query: 355 SSLPSSDRGGMHIEYARSKMRKR 287
+HI+ A+S + +
Sbjct: 96 MVFDLEKHSTLHIDLAKSNPKSK 118
>ref|NP_492508.1| MEChanosensory abnormality MEC-8, RNA recognition motif containing
protein (33.5 kD) (mec-8) [Caenorhabditis elegans]
gi|7503522|pir||T19360 hypothetical protein F46A9.6 -
Caenorhabditis elegans gi|1369981|emb|CAA64867.1| mec-8
[Caenorhabditis elegans] gi|3874374|emb|CAB02754.1| C.
elegans MEC-8 protein (corresponding sequence F46A9.6)
[Caenorhabditis elegans] gi|3877217|emb|CAB03111.1| C.
elegans MEC-8 protein (corresponding sequence F46A9.6)
[Caenorhabditis elegans]
Length = 312
Score = 78.2 bits (191), Expect = 6e-14
Identities = 33/81 (40%), Positives = 54/81 (65%)
Frame = -1
Query: 538 CSTLFIANLGPNCTEDELKQALSVYTGFNMVQMRSRGGMPVAFADFEEIDQATKVLEELQ 359
CSTLF+ANL ED L+ ++GF +++ ++ G VAF ++ ++ +AT+ + LQ
Sbjct: 227 CSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQ 286
Query: 358 GSSLPSSDRGGMHIEYARSKM 296
G + ++DRGG+ IEYAR+KM
Sbjct: 287 GFQITANDRGGLRIEYARNKM 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,020,776
Number of Sequences: 1393205
Number of extensions: 10300778
Number of successful extensions: 19073
Number of sequences better than 10.0: 307
Number of HSP's better than 10.0 without gapping: 18608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19040
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
