Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011160A_C01 KMC011160A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91V93|RBT2_MOUSE Rho-related BTB domain-containing protein 2... 33 1.9
ref|NP_705734.2| Rho-related BTB domain containing 2 [Mus muscul... 33 1.9
gb|AAH26836.1| Similar to Rho-related BTB domain containing 2 [M... 33 1.9
dbj|BAC38133.1| unnamed protein product [Mus musculus] 33 1.9
dbj|BAC65636.1| mKIAA0717 protein [Mus musculus] 33 1.9
>sp|Q91V93|RBT2_MOUSE Rho-related BTB domain-containing protein 2 (Deleted in breast
cancer 2 gene protein homolog)
gi|16226041|gb|AAL16061.1| DBC2 protein [Mus musculus]
gi|16226055|gb|AAL16063.1|AF420002_1 DBC2 protein [Mus
musculus]
Length = 728
Score = 33.5 bits (75), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 412 PSCHRCHPQQHLHHQQHH 359
P HR HP+QH HH HH
Sbjct: 316 PEDHRSHPEQHHHHHHHH 333
>ref|NP_705734.2| Rho-related BTB domain containing 2 [Mus musculus]
gi|26332457|dbj|BAC29946.1| unnamed protein product [Mus
musculus]
Length = 728
Score = 33.5 bits (75), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 412 PSCHRCHPQQHLHHQQHH 359
P HR HP+QH HH HH
Sbjct: 316 PEDHRSHPEQHHHHHHHH 333
>gb|AAH26836.1| Similar to Rho-related BTB domain containing 2 [Mus musculus]
Length = 728
Score = 33.5 bits (75), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 412 PSCHRCHPQQHLHHQQHH 359
P HR HP+QH HH HH
Sbjct: 316 PEDHRSHPEQHHHHHHHH 333
>dbj|BAC38133.1| unnamed protein product [Mus musculus]
Length = 728
Score = 33.5 bits (75), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 412 PSCHRCHPQQHLHHQQHH 359
P HR HP+QH HH HH
Sbjct: 316 PEDHRSHPEQHHHHHHHH 333
>dbj|BAC65636.1| mKIAA0717 protein [Mus musculus]
Length = 616
Score = 33.5 bits (75), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 412 PSCHRCHPQQHLHHQQHH 359
P HR HP+QH HH HH
Sbjct: 340 PEDHRSHPEQHHHHHHHH 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,991,407
Number of Sequences: 1393205
Number of extensions: 8997834
Number of successful extensions: 29268
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 25528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28557
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
