Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011158A_C01 KMC011158A_c01
(777 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564333.1| expressed protein; protein id: At1g29690.1, sup... 152 5e-36
dbj|BAB56041.1| P0481E12.26 [Oryza sativa (japonica cultivar-gro... 150 2e-35
pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thalian... 88 2e-16
pir||H86281 protein F10B6.18 [imported] - Arabidopsis thaliana g... 87 2e-16
ref|NP_172931.1| hypothetical protein; protein id: At1g14780.1, ... 87 2e-16
>ref|NP_564333.1| expressed protein; protein id: At1g29690.1, supported by cDNA:
gi_15809819, supported by cDNA: gi_18650617 [Arabidopsis
thaliana] gi|25333974|pir||C86420 unknown protein,
124288-121737 [imported] - Arabidopsis thaliana
gi|12323548|gb|AAG51760.1|AC068667_39 unknown protein;
124288-121737 [Arabidopsis thaliana]
gi|18650618|gb|AAL75908.1| At1g29690/F15D2_24
[Arabidopsis thaliana]
Length = 561
Score = 152 bits (384), Expect = 5e-36
Identities = 77/120 (64%), Positives = 90/120 (74%)
Frame = -3
Query: 775 VCVVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHIPNQPLPTVSVGNTSNPDE 596
V +VTGAQLGVWDFGS+NVL++KLL+S++PGCTIRRS+WDH P + G S
Sbjct: 446 VHIVTGAQLGVWDFGSKNVLHLKLLFSKVPGCTIRRSVWDHTPVASSGRLEPGGPS---- 501
Query: 595 SSISFRENTTPGNELVKYVDLSEMSKGPQDPPGHWLVTGGKLGVEKGKIVLRLKYSLLNY 416
+S S E + +L K VD SEM KGPQD PGHWLVTG KLGVEKGKIVLR+KYSLLNY
Sbjct: 502 TSSSTEEVSGQSGKLAKIVDSSEMLKGPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLLNY 561
>dbj|BAB56041.1| P0481E12.26 [Oryza sativa (japonica cultivar-group)]
Length = 553
Score = 150 bits (379), Expect = 2e-35
Identities = 75/120 (62%), Positives = 91/120 (75%)
Frame = -3
Query: 775 VCVVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHIPNQPLPTVSVGNTSNPDE 596
V +VTGAQLGVWDFG+++VL++KLL+SR+PGCTIRRS+WDH P+ L DE
Sbjct: 445 VYIVTGAQLGVWDFGAKSVLHLKLLFSRVPGCTIRRSVWDHSPSSSL-------VHRTDE 497
Query: 595 SSISFRENTTPGNELVKYVDLSEMSKGPQDPPGHWLVTGGKLGVEKGKIVLRLKYSLLNY 416
+S S +N +LVK VD++E KGPQD PGHWLVTG KLGVEKGKIV+R KYSLLNY
Sbjct: 498 ASSSSSDNA----KLVKIVDMTETLKGPQDAPGHWLVTGAKLGVEKGKIVVRAKYSLLNY 553
>pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thaliana
gi|5051771|emb|CAB45064.1| putative protein [Arabidopsis
thaliana] gi|7269279|emb|CAB79339.1| putative protein
[Arabidopsis thaliana]
Length = 606
Score = 87.8 bits (216), Expect = 2e-16
Identities = 52/134 (38%), Positives = 78/134 (57%), Gaps = 19/134 (14%)
Frame = -3
Query: 769 VVTGAQLGVWDFGSRNVLYMKLLYSRLPGCT-IRRSLWDHI----PNQPLPTVSVGNTSN 605
VVTGAQL V G +NVL+++L +SR+ G T ++ S WD P L + + +
Sbjct: 457 VVTGAQLHVESHGFKNVLFLRLCFSRVVGATLVKNSEWDEAVGFAPKSGLISTLISHHFT 516
Query: 604 ------PDESSISFRENTTPGN--------ELVKYVDLSEMSKGPQDPPGHWLVTGGKLG 467
P + ++ PG +L+K+VD SEM++GPQ+ PG+W+V+G +L
Sbjct: 517 AAQKPPPRPADVNINSAIYPGGPPVPTQAPKLLKFVDTSEMTRGPQESPGYWVVSGARLL 576
Query: 466 VEKGKIVLRLKYSL 425
VEKGKI L++KYSL
Sbjct: 577 VEKGKISLKVKYSL 590
>pir||H86281 protein F10B6.18 [imported] - Arabidopsis thaliana
gi|8778214|gb|AAF79223.1|AC006917_8 F10B6.18
[Arabidopsis thaliana]
Length = 645
Score = 87.4 bits (215), Expect = 2e-16
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 21/138 (15%)
Frame = -3
Query: 769 VVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHIP-------------NQPLPT 629
+VTGAQL V GS++VL+++L Y+++ + ++ W H P + PL +
Sbjct: 500 IVTGAQLEVKKHGSKSVLHLRLRYTKVSDHYVVQNSWVHGPIGTSQKSGIFSSMSMPLTS 559
Query: 628 VSVG-NTSNPDESSISFRENTTPG-------NELVKYVDLSEMSKGPQDPPGHWLVTGGK 473
SV N D++ + PG N++VK+VDLS++ +GPQ PGHWLVTG +
Sbjct: 560 GSVHHNMIQKDKNEVVLDSGVFPGGPPVPANNKIVKFVDLSQLCRGPQHSPGHWLVTGVR 619
Query: 472 LGVEKGKIVLRLKYSLLN 419
L ++KGK+ L +K++LL+
Sbjct: 620 LYLDKGKLCLHVKFALLH 637
>ref|NP_172931.1| hypothetical protein; protein id: At1g14780.1, supported by cDNA:
gi_20466443 [Arabidopsis thaliana]
gi|20466444|gb|AAM20539.1| unknown protein [Arabidopsis
thaliana] gi|27311987|gb|AAO00959.1| unknown protein
[Arabidopsis thaliana]
Length = 627
Score = 87.4 bits (215), Expect = 2e-16
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 21/138 (15%)
Frame = -3
Query: 769 VVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHIP-------------NQPLPT 629
+VTGAQL V GS++VL+++L Y+++ + ++ W H P + PL +
Sbjct: 482 IVTGAQLEVKKHGSKSVLHLRLRYTKVSDHYVVQNSWVHGPIGTSQKSGIFSSMSMPLTS 541
Query: 628 VSVG-NTSNPDESSISFRENTTPG-------NELVKYVDLSEMSKGPQDPPGHWLVTGGK 473
SV N D++ + PG N++VK+VDLS++ +GPQ PGHWLVTG +
Sbjct: 542 GSVHHNMIQKDKNEVVLDSGVFPGGPPVPANNKIVKFVDLSQLCRGPQHSPGHWLVTGVR 601
Query: 472 LGVEKGKIVLRLKYSLLN 419
L ++KGK+ L +K++LL+
Sbjct: 602 LYLDKGKLCLHVKFALLH 619
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,692,572
Number of Sequences: 1393205
Number of extensions: 14706547
Number of successful extensions: 38938
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 37280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38914
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
