Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011151A_C01 KMC011151A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700665.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.7
ref|ZP_00126008.1| hypothetical protein [Pseudomonas syringae pv... 33 3.6
>ref|NP_700665.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495057|gb|AAN35389.1|AE014832_11 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 213
Score = 33.5 bits (75), Expect = 2.7
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = +3
Query: 33 KQKYKGFFNPIQVMRE*KIKSNNIYKSGESFHFDNNPYYTLEKDSRKHVSLKPY*EKP-- 206
K+++K + N I ++ +NN YK+ E+FH NN + +K +K V P+ EK
Sbjct: 45 KKQFKKY-NKINKKKKKINNNNNKYKTNETFHVYNNIQESGKKKKKKKVKNIPHDEKTIF 103
Query: 207 ---HGENLVKEKKYKFTGVKGDPQRRTKTKTGAYT 302
+K+ K KF+ + K K ++
Sbjct: 104 VKIRNSEQIKKAKIKFSLSNNTAYLKVKQKDTGFS 138
>ref|ZP_00126008.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 453
Score = 33.1 bits (74), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Frame = -2
Query: 428 CLWGNSWW*LLGC*YYLSSLEVT---SWWVEIFV*NKLRVGT 312
CLWG W L+G + ++ +T SWWV +F + GT
Sbjct: 357 CLWGGGLWVLIGLDFVAIAVFLTMNRSWWVAVFAWLRATAGT 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,766,603
Number of Sequences: 1393205
Number of extensions: 14019391
Number of successful extensions: 34835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34810
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
