Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011149A_C01 KMC011149A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187185.1| hypothetical protein; protein id: At3g05340.1 [... 66 2e-10
>ref|NP_187185.1| hypothetical protein; protein id: At3g05340.1 [Arabidopsis
thaliana] gi|6729044|gb|AAF27040.1|AC009177_30
hypothetical protein [Arabidopsis thaliana]
Length = 770
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/42 (71%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Frame = -3
Query: 507 YDISAEQDLLYSLIIKAKFENNRYQTP-KKQPQTSTQHVDWF 385
YD SAE + LY+LI+KAKFENNRYQ P KKQP++S +HVDWF
Sbjct: 729 YDCSAEAEFLYALIVKAKFENNRYQKPKKKQPESSGKHVDWF 770
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,277,069
Number of Sequences: 1393205
Number of extensions: 8518528
Number of successful extensions: 15312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15310
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
