Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011126A_C04 KMC011126A_c04
(1345 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [... 523 e-147
sp|P27520|CB23_PEA Chlorophyll A-B binding protein 215, chloropl... 523 e-147
gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding p... 510 e-143
gb|AAC34983.1| light harvesting chlorophyll A/B binding protein ... 508 e-142
sp|P27518|CB21_GOSHI Chlorophyll A-B binding protein 151, chloro... 501 e-140
>gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 523 bits (1348), Expect = e-147
Identities = 251/265 (94%), Positives = 258/265 (96%)
Frame = -3
Query: 1058 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 879
MATSAIQQSAF GQTALKQ NEL+RK GG GKGR TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQLNELVRKTGGAGKGRTTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 878 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 699
FSEQIPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCTFPEILE+
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 698 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 519
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 518 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 339
LGEGLDP+YPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 338 NLYDHVADPVANNAWAFATNFVPGQ 264
NLYDHVADPVANNAWA+ATNFVPGQ
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>sp|P27520|CB23_PEA Chlorophyll A-B binding protein 215, chloroplast precursor (LHCII
type II CAB-215) (LHCP) gi|100026|pir||S16592 chlorophyll
a/b-binding protein - garden pea gi|20658|emb|CAA40365.1|
chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 523 bits (1347), Expect = e-147
Identities = 247/265 (93%), Positives = 259/265 (97%)
Frame = -3
Query: 1058 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 879
MATSAIQQSAFTG+T L+QGNE +RK G FG+ RFTMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 878 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 699
FSEQIPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCTFPE+LE+
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 120
Query: 698 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 519
NGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWATQVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 518 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 339
LGEGLDPLYPGGAFDPLGLADDPD+FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 338 NLYDHVADPVANNAWAFATNFVPGQ 264
NLYDHVADPVANNAWAFATNFVPGQ
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGQ 265
>gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 510 bits (1314), Expect = e-143
Identities = 244/265 (92%), Positives = 253/265 (95%)
Frame = -3
Query: 1058 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 879
MAT+A QQSAF GQTALKQ NE +RK GG GKGR MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATTAFQQSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 878 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 699
FS+QIPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALG FPEILE+
Sbjct: 61 FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEK 120
Query: 698 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 519
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 518 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 339
LGEGLDP+YPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS+FGFFVQAIVTGKGPIQ
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQ 240
Query: 338 NLYDHVADPVANNAWAFATNFVPGQ 264
NLYDHVADPVANNAWA+ATNFVPGQ
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 508 bits (1307), Expect = e-142
Identities = 241/265 (90%), Positives = 251/265 (93%)
Frame = -3
Query: 1058 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 879
MATSAIQQSAF GQTALKQ NEL+RK GG G GR TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 878 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 699
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFAKN ELEVIHSRWAMLGALGC FPEIL +
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSK 120
Query: 698 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 519
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 518 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 339
LGEGLDPLYPGGAFDPLGLADDP+AFAELKVKELKNGRLAM SMFGFFVQAIVTGKGP++
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFVQAIVTGKGPVE 240
Query: 338 NLYDHVADPVANNAWAFATNFVPGQ 264
NLYDHVADPVANNAWA+ATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGK 265
>sp|P27518|CB21_GOSHI Chlorophyll A-B binding protein 151, chloroplast precursor (LHCII
type II CAB-151) (LHCP) gi|99601|pir||S20917 chlorophyll
a/b-binding protein - upland cotton
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein
[Gossypium hirsutum]
Length = 265
Score = 501 bits (1290), Expect = e-140
Identities = 238/265 (89%), Positives = 251/265 (93%)
Frame = -3
Query: 1058 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 879
MATSAIQQSAF GQTALKQ NEL+ K G G GR +MRRTVKSAP SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60
Query: 878 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 699
FS+QIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FPEIL +
Sbjct: 61 FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 698 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 519
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 518 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 339
LGEGLDP+YPGGAFDPLGLADDPDAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 338 NLYDHVADPVANNAWAFATNFVPGQ 264
NL+DH+ADPVANNAWA+ATNFVPG+
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPGK 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,249,583,981
Number of Sequences: 1393205
Number of extensions: 30809855
Number of successful extensions: 107219
Number of sequences better than 10.0: 448
Number of HSP's better than 10.0 without gapping: 88841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103962
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 86960707840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
