Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011121A_C01 KMC011121A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566089.1| putative RAV-like B3 domain DNA binding protein... 39 0.079
ref|NP_171611.1| DNA-binding protein, putative; protein id: At1g... 37 0.30
ref|NP_229057.1| hypothetical protein [Thermotoga maritima] gi|7... 37 0.30
ref|NP_701281.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.39
dbj|BAA88057.1| polyprotein [Hepatitis C virus] 36 0.51
>ref|NP_566089.1| putative RAV-like B3 domain DNA binding protein; protein id:
At2g46870.1 [Arabidopsis thaliana]
gi|7485494|pir||T02200 probable RAV-like B3 domain DNA
binding protein [imported] - Arabidopsis thaliana
gi|3522951|gb|AAC34233.1| putative RAV-like B3 domain
DNA binding protein [Arabidopsis thaliana]
gi|20197317|gb|AAM15018.1| putative RAV-like B3 domain
DNA binding protein [Arabidopsis thaliana]
gi|26451145|dbj|BAC42676.1| putative RAV-like B3 domain
DNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 38.5 bits (88), Expect = 0.079
Identities = 29/75 (38%), Positives = 39/75 (51%), Gaps = 10/75 (13%)
Frame = -3
Query: 610 TAAKRLRLFGVNMECASS-------SSSSLPSPSLPQNLRVPHEDST---ISLSSASFGI 461
TA KRLRLFGV+MEC S SS SLP+ S+ + L S+S
Sbjct: 235 TAGKRLRLFGVDMECGESGMTNSTEEESSSSGGSLPRGGGGGASSSSFFQLRLGSSSEDD 294
Query: 460 GDLQRGEASVLFDLD 416
++G++S+ FDLD
Sbjct: 295 HFTKKGKSSLSFDLD 309
>ref|NP_171611.1| DNA-binding protein, putative; protein id: At1g01030.1 [Arabidopsis
thaliana] gi|25406713|pir||B86141 protein T25K16.3
[imported] - Arabidopsis thaliana
gi|6715649|gb|AAF26476.1|AC007323_17 T25K16.3
[Arabidopsis thaliana]
Length = 358
Score = 36.6 bits (83), Expect = 0.30
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 15/54 (27%)
Frame = -3
Query: 613 NTAAKRLRLFGVNMECASS---------------SSSSLPSPSLPQNLRVPHED 497
+TA KRLRLFGVNMEC + +SS S +L NL H+D
Sbjct: 278 STAGKRLRLFGVNMECGNDYNQQEESWLVPRGEIGASSSSSSALRLNLSTDHDD 331
>ref|NP_229057.1| hypothetical protein [Thermotoga maritima] gi|7462634|pir||F72277
hypothetical protein - Thermotoga maritima (strain MSB8)
gi|4981807|gb|AAD36327.1|AE001780_11 hypothetical
protein [Thermotoga maritima]
Length = 191
Score = 36.6 bits (83), Expect = 0.30
Identities = 16/54 (29%), Positives = 32/54 (58%)
Frame = -3
Query: 367 IMMEKKKKKMMPVLKFTGIASYTLSFAALLLLLLFFIIFLFCFFLPFLHATKES 206
+++ ++++ ++ +L F+ T+S L +L F+ F+F FF+P L A ES
Sbjct: 67 LLVPRRRENLLSLLVFSAFYGLTVSAGFSLFVLPGFVAFMFLFFVPLLSAKDES 120
>ref|NP_701281.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496348|gb|AAN36005.1|AE014842_27 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2563
Score = 36.2 bits (82), Expect = 0.39
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 105 RMFQYIFTTQLI-H*DKSSNSNYHFLSSEEESLKALSLVA*RKGRKKQNKKIIKNSSNNN 281
++ + +F+ +I + DK N+N+ + E+ + K L +K + K+NK IKN++NNN
Sbjct: 588 QIIKNVFSNDIIRYRDKDHNNNFKRENEEDRNFKLLHNKTSKKYKNKKNK--IKNNNNNN 645
Query: 282 NAAKESV*LAIPVN 323
N S ++ +N
Sbjct: 646 NNNNSSRSCSVIIN 659
>dbj|BAA88057.1| polyprotein [Hepatitis C virus]
Length = 3033
Score = 35.8 bits (81), Expect = 0.51
Identities = 30/96 (31%), Positives = 51/96 (52%), Gaps = 5/96 (5%)
Frame = -3
Query: 619 SSNTAAKRLRLFGVNMECASSSSSSLPSPSLPQNLRVPHEDSTISLSSASFGIG-DLQRG 443
++ AA+RL E ASSS+S L +PSL ++ + + A+F +G D+ R
Sbjct: 2186 TAEAAARRLARGSPPSE-ASSSASQLSAPSLRATCTAHAKNYAVEMVDANFFMGSDVTRI 2244
Query: 442 EAS----VLFDLDPSLQYRQ**KPS*RNKIMMEKKK 347
E+ +L LDPS++ +PS ++ ++ KKK
Sbjct: 2245 ESETKVLILDSLDPSVEEEDEREPSVPSEYLLPKKK 2280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,232,145
Number of Sequences: 1393205
Number of extensions: 12623605
Number of successful extensions: 67536
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 52136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64296
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
