Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011117A_C01 KMC011117A_c01
(839 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564276.1| putative sensory transduction histidine kinase;... 33 6.8
>ref|NP_564276.1| putative sensory transduction histidine kinase; protein id:
At1g27320.1, supported by cDNA: gi_13537197 [Arabidopsis
thaliana] gi|13537198|dbj|BAB40775.1| histidine kinase
[Arabidopsis thaliana]
Length = 1036
Score = 32.7 bits (73), Expect = 6.8
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2
Query: 838 FEAEQLYREVSRFFPS 791
FEAEQLYREVSRFF S
Sbjct: 1015 FEAEQLYREVSRFFNS 1030
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,910,100
Number of Sequences: 1393205
Number of extensions: 15543212
Number of successful extensions: 26995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26991
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
