Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011113A_C01 KMC011113A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||I30010 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 37 0.17
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 37 0.17
ref|NP_701917.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.23
ref|NP_704485.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.23
gb|AAL11031.1| even-skipped-like protein [Theromyzon trizonare] 37 0.23
>pir||I30010 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Leishmania
tarentolae mitochondrion
Length = 502
Score = 37.0 bits (84), Expect = 0.17
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Frame = -1
Query: 382 SLWFVC-FLCLNLLMTLLVL--------FILLCLFFAVFLVLILP*IFFF 260
SLWF+C F C +LL+ LL+L F+ +CLFF F V+ + FF
Sbjct: 395 SLWFLCGFYCKDLLLCLLMLTSFFFILEFLCVCLFFIFFTVIYNYFLLFF 444
Score = 33.1 bits (74), Expect = 2.5
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -1
Query: 394 YCIVSLWFVCFLCLNLLMTLLVLFILLCLFF 302
YC+++ +F+ FLC++ + + ++F+LL F
Sbjct: 203 YCVITFYFLTFLCVDYIFIVFIVFLLLTCGF 233
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 37.0 bits (84), Expect = 0.17
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Frame = -1
Query: 394 YCIVSLWFVCFLCLNLLMTLLVLFIL--LCLFFAVFLVLILP*IFFFADADDKMHRYEFS 221
YC + L ++CF+ + ++ L +F+ C+F++ +L F F D F+
Sbjct: 458 YCFLGL-YMCFILIFFVIDFLYIFVFSSYCMFWSFYLYY-----FNFFDIAS------FT 505
Query: 220 VDFIVTRNFVSFPKK----FIVDCVLNF*ELFLDGCRTEWYSLFICF 92
V +++ F+ + F VDC++ F +FL C T + LF C+
Sbjct: 506 VFVMISLAFIYYGCVLFYFFNVDCIMLFWRIFLIICVTFMFGLFSCW 552
Score = 34.7 bits (78), Expect = 0.86
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Frame = -1
Query: 382 SLWFVC-FLCLNLLMTLLVL--------FILLCLFFAVFLVLILP*IFFF 260
SLWF+C F C +LL+ L+L F+ +C+FF F V+ + FF
Sbjct: 383 SLWFLCGFYCKDLLLCTLMLVSFHFILEFLFVCIFFIFFTVIYNYFLLFF 432
>ref|NP_701917.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497092|gb|AAN36641.1|AE014816_26 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2456
Score = 36.6 bits (83), Expect = 0.23
Identities = 22/92 (23%), Positives = 41/92 (43%)
Frame = +3
Query: 108 EYHSVLQPSKKSSQKLRTQSTINFFGNETKFLVTIKSTENSYRCILSSASAKKKIQGKIR 287
E++ +L +K+ K+ +NF K + + Y C +SA+ KI I
Sbjct: 24 EHNDILFFQEKNKNKIGLGRVVNF-----KIELVLNDIHFYYPCCETSANHCLKILNNID 78
Query: 288 TRKTAKNKHNRINNTNKVINKFRHKKQTNHKD 383
++ K N++N NK+ ++K+ N D
Sbjct: 79 NKEYVKKLINKLNKNNKISTNTKNKEDNNKND 110
>ref|NP_704485.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499224|emb|CAD51304.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2572
Score = 36.6 bits (83), Expect = 0.23
Identities = 30/96 (31%), Positives = 51/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 261 KKKIQGKIRTRKTAKNKHNRINNTNKVINKFRHKKQTNHKDTIQ*FHYSFFYI*ASIHQ* 440
+KKI+ + +K K+K+N +N+ F+ + HK + F++S+F +
Sbjct: 814 RKKIKNVLNIKKN-KHKYNIMNH-----KVFKDTNKNMHKHSYTNFNFSYFDL------- 860
Query: 441 *GNISKFATL*TKIHS*T-QKKDSSFKIKYIRTETV 545
NI+KF TL + QKKDSS K+K+I+ + V
Sbjct: 861 --NINKFLTLFKNVQDECIQKKDSS-KVKHIKKKKV 893
>gb|AAL11031.1| even-skipped-like protein [Theromyzon trizonare]
Length = 421
Score = 36.6 bits (83), Expect = 0.23
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Frame = +3
Query: 72 IYNLHRQKQ----INREYHSVLQPSKKSSQKLRTQSTI-NFFGNETKFLVTIKSTENSYR 236
IY+ + K +N +YH + Q ++ Q+ + Q + N F N+ K+ S +S
Sbjct: 249 IYSAYHNKPANNLLNDKYHLLQQQQQQLHQQFQHQQKLRNVFNNKAKYF----SASSSSM 304
Query: 237 CILSSASAKKKIQGKIRTRKTAKNKHNRINNTNKVINKFRHKKQTNHKDT 386
SSA KI+ I N +N NN N N + TN+ ++
Sbjct: 305 SPPSSAKTLIKIEDSINNNNNNNNNNNNNNNNN---NNNTNSNNTNNNNS 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,405,775
Number of Sequences: 1393205
Number of extensions: 8608789
Number of successful extensions: 28879
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 26159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28675
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
