Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011107A_C01 KMC011107A_c01
(397 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171626.1| hypothetical protein; protein id: At1g01180.1 [... 147 2e-35
ref|NP_102731.1| unknown protein [Mesorhizobium loti] gi|1402190... 37 0.078
ref|NP_084798.1| RNA polymerase beta'' chain [Lotus japonicus] g... 33 0.66
gb|ZP_00043771.1| hypothetical protein [Magnetococcus sp. MC-1] 33 0.86
ref|ZP_00067128.1| hypothetical protein [Microbulbifer degradans... 32 1.5
>ref|NP_171626.1| hypothetical protein; protein id: At1g01180.1 [Arabidopsis
thaliana] gi|25406717|pir||A86142 protein T25K16.17
[imported] - Arabidopsis thaliana
gi|6715637|gb|AAF26464.1|AC007323_5 T25K16.17
[Arabidopsis thaliana]
Length = 478
Score = 147 bits (372), Expect = 2e-35
Identities = 73/98 (74%), Positives = 82/98 (83%)
Frame = -2
Query: 396 LQNAVTRNLTESVLPVPFSSGSGLIWLCELGVFADLVEIDAGHDFLSAWSDINRGYRILR 217
+QN V + + S+LPVPFS+GS L LCE GV ADLVEIDAGHDF SAW+DINR RILR
Sbjct: 199 MQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILR 258
Query: 216 PGGVIFGHDYFTAADHRGVRRAVDLFARIHSLKVKIDG 103
PGGVIFGHDYFTAAD+RGVRRAV+LFA I+ LKVK DG
Sbjct: 259 PGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDG 296
>ref|NP_102731.1| unknown protein [Mesorhizobium loti] gi|14021906|dbj|BAB48517.1|
unknown protein [Mesorhizobium loti]
Length = 233
Score = 36.6 bits (83), Expect = 0.078
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = -2
Query: 381 TRNLTESVLPVPFSSGSGLIWLCE-----LGVFADLVEIDAGHDFLSAWSDINRGYRILR 217
T L LPV FSS I C G DLV +D H + + DI +R++
Sbjct: 54 TTELPLDGLPVDFSSADDDIAACLEDTRLKGQTFDLVFVDPHHTYECSARDIREAFRMVS 113
Query: 216 PGGVIFGHD 190
PGG + HD
Sbjct: 114 PGGAVVVHD 122
>ref|NP_084798.1| RNA polymerase beta'' chain [Lotus japonicus]
gi|23822109|sp|Q9BBS7|RPOD_LOTJA DNA-directed RNA
polymerase beta" chain gi|13358979|dbj|BAB33196.1| RNA
polymerase beta' subunit-2 [Lotus japonicus]
Length = 1332
Score = 33.5 bits (75), Expect = 0.66
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -2
Query: 240 NRGYRILRPGGVIFGHDYFTAADHRGVRRAVDLFARIHSLKVKIDGPPLGY*LYPKVHYT 61
NR + IL + H G++ ++ F R H + +KI PLG + P++
Sbjct: 910 NRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG--VAPQIANF 967
Query: 60 FVFHHI 43
F F+H+
Sbjct: 968 FSFYHL 973
>gb|ZP_00043771.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 245
Score = 33.1 bits (74), Expect = 0.86
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -2
Query: 294 DLVEIDAGHDFLSAWSDINRGYRILRPGGVIFGHDY----FTAADHRGVRRAVDLFARIH 127
D + ID H +D+ + ++ GG+I GHDY + GV AV+ F + H
Sbjct: 110 DWIYIDGLHSQAGVTADLESYHTKIKQGGLILGHDYCNHPYAVYQQFGVVEAVNQFVQSH 169
Query: 126 S 124
+
Sbjct: 170 N 170
>ref|ZP_00067128.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 209
Score = 32.3 bits (72), Expect = 1.5
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 372 LTESVLPVPFSSGSGL-IWLCELGVFADLVEIDAGHDFLSAWSDINRGYRILRPGGVIFG 196
L +V+P+ SS +W LG +V +D GH +A D + + + PGG++
Sbjct: 112 LESTVIPIVASSQQLTPLWAIPLG----MVFVDGGHSEAAALFDCSEWAKHIVPGGILAV 167
Query: 195 HDYFTAADHRG 163
HD F + G
Sbjct: 168 HDLFEHPEDGG 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,234,035
Number of Sequences: 1393205
Number of extensions: 7557803
Number of successful extensions: 31793
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 31261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31770
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
