Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011059A_C01 KMC011059A_c01
(368 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC57458.1| hypothetical protein-2 [Babesia rodhaini] 32 2.0
ref|XP_223541.1| similar to leucine zipper-EF-hand containing tr... 30 9.9
>dbj|BAC57458.1| hypothetical protein-2 [Babesia rodhaini]
Length = 681
Score = 32.0 bits (71), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 186 SSHLIQGLRDKYTSNTGELGFRGETQFIN 272
++H+ GLR+ YT + E+G+ G T F N
Sbjct: 269 TTHIFDGLREFYTLDENEIGYYGTTDFAN 297
>ref|XP_223541.1| similar to leucine zipper-EF-hand containing transmembrane protein
1 [Mus musculus] [Rattus norvegicus]
Length = 851
Score = 29.6 bits (65), Expect = 9.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 288 GFHHVITTLLWFRVNIIHDAIPFL 359
GFHHV +W ++H+ +PF+
Sbjct: 44 GFHHVSCCFIWRTCRLLHEPLPFV 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,729,941
Number of Sequences: 1393205
Number of extensions: 6143863
Number of successful extensions: 11975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11975
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
