Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011057A_C01 KMC011057A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK93949.1|AF284760_1 HCF106 [Pisum sativum] 97 1e-19
ref|NP_200057.1| HCF106 (gb|AAD32652.1); protein id: At5g52440.1... 49 4e-05
pir||T01297 HCF106 protein precursor, chloroplast - maize gi|266... 39 0.033
emb|CAC87579.1| surface protein [Theileria annulata] 36 0.22
emb|CAC87577.1| surface protein [Theileria annulata] 36 0.28
>gb|AAK93949.1|AF284760_1 HCF106 [Pisum sativum]
Length = 261
Score = 97.1 bits (240), Expect = 1e-19
Identities = 56/81 (69%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Frame = -1
Query: 503 SPIAVDPDGTQDPSRAYSSEEYLKITEEQLKASAAQQQQGQTPPRKEGELEPQIQPLAAK 324
S AVDP+G D S+AYSSEEYLKITEEQLKA AAQQQ+ QT KE E+E QIQP A
Sbjct: 182 SQTAVDPNGKVDESKAYSSEEYLKITEEQLKAVAAQQQE-QTSSPKEDEIEQQIQP-PAN 239
Query: 323 ETATTVSPPQKPESE-TIPQD 264
ETA TV PPQKPESE ++P D
Sbjct: 240 ETAATVPPPQKPESESSLPSD 260
>ref|NP_200057.1| HCF106 (gb|AAD32652.1); protein id: At5g52440.1, supported by cDNA:
gi_4894913 [Arabidopsis thaliana]
gi|4894914|gb|AAD32652.1|AF139188_1 HCF106 [Arabidopsis
thaliana] gi|10177410|dbj|BAB10541.1| HCF106
[Arabidopsis thaliana] gi|26452484|dbj|BAC43327.1|
putative HCF106 [Arabidopsis thaliana]
gi|28973019|gb|AAO63834.1| putative HCF106 protein
[Arabidopsis thaliana]
Length = 260
Score = 48.5 bits (114), Expect = 4e-05
Identities = 31/76 (40%), Positives = 40/76 (51%), Gaps = 8/76 (10%)
Frame = -1
Query: 494 AVDPDGTQDPSRAYSSEEYLKITEEQLKA------SAAQQQQGQTPPRKEGELEP--QIQ 339
A DP+ +Q P +AY+SE+YLK TEEQLKA Q Q Q PP+ P + Q
Sbjct: 185 ANDPNDSQSP-KAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQEPPQPTTVQTPTGESQ 243
Query: 338 PLAAKETATTVSPPQK 291
P T SPP++
Sbjct: 244 PNGTARETTAASPPRQ 259
>pir||T01297 HCF106 protein precursor, chloroplast - maize
gi|2665536|gb|AAC01571.1| HCF106 precursor protein [Zea
mays]
Length = 243
Score = 38.9 bits (89), Expect = 0.033
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 12/56 (21%)
Frame = -1
Query: 494 AVDPDGTQDPSRAYSSEEYLKITEEQLKASAA------------QQQQGQTPPRKE 363
A DP+ +P+ Y+SEE +K+TEEQ+ ASAA QQ++ T PR E
Sbjct: 153 AADPNVKPEPA-PYTSEELMKVTEEQIAASAAAAWNPQQPATSQQQEEAPTTPRSE 207
>emb|CAC87579.1| surface protein [Theileria annulata]
Length = 132
Score = 36.2 bits (82), Expect = 0.22
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 503 SPIAVDPDGTQDPSRAYSSEEYLKITEEQLKASAAQQQQGQTPPRKEGELEPQIQPLAAK 324
+PI DP+ Q P + ++ ++E + + QQ P + ELEP+ +
Sbjct: 5 NPIDFDPNDDQQPLDPNQLMDQIEQSQEDTQQEPIEPQQPTQPSTEPEELEPETVTVEVP 64
Query: 323 ETATTVSPPQKPESE--TIPQDS 261
E T+ P + ++E T QDS
Sbjct: 65 EPVTSEEPKESTQTEEPTETQDS 87
>emb|CAC87577.1| surface protein [Theileria annulata]
Length = 328
Score = 35.8 bits (81), Expect = 0.28
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Frame = -1
Query: 503 SPIAVDPDGTQDP-------SRAYSSEEYLKITEEQLKASAAQQQQGQTPPRKEGELEPQ 345
+PI DP+ Q P +A S+E ++ TEE S +Q+Q +T +E E E
Sbjct: 30 NPIDFDPNDDQQPLDPNQLIDQAEQSQEPIQATEE----SPQEQEQIETQESEELEPESV 85
Query: 344 IQPLAAKETA--TTVSPPQKPESETIP 270
+ +ETA ++ P ++PE +T P
Sbjct: 86 SVEVPTEETAPEESIEPTKQPEQDTQP 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,370,994
Number of Sequences: 1393205
Number of extensions: 8293891
Number of successful extensions: 29923
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 25852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29059
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
