Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011055A_C01 KMC011055A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181209.1| pectinesterase family; protein id: At2g36710.1 ... 114 5e-25
gb|AAO22722.1| putative pectinesterase family protein [Arabidops... 114 5e-25
ref|NP_172023.1| pectinesterase family; protein id: At1g05310.1 ... 96 1e-19
pir||H86187 hypothetical protein [imported] - Arabidopsis thalia... 96 1e-19
ref|NP_197474.1| pectinesterase family; protein id: At5g19730.1,... 96 2e-19
>ref|NP_181209.1| pectinesterase family; protein id: At2g36710.1 [Arabidopsis
thaliana] gi|25408502|pir||G84783 probable
pectinesterase [imported] - Arabidopsis thaliana
gi|4415916|gb|AAD20147.1| putative pectinesterase
[Arabidopsis thaliana]
Length = 407
Score = 114 bits (285), Expect = 5e-25
Identities = 53/90 (58%), Positives = 71/90 (78%)
Frame = -3
Query: 458 LYEGCTIHSIAKPDWDGVSGSITAQGRQSINEETGFSLVNGTILGTGNVWLGRAGGAFST 279
LY+ CTI+SIAK + GV+GSITAQGRQS +E++GFS VN I G+G + LGRA GA++T
Sbjct: 253 LYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAWGAYAT 312
Query: 278 AVFSKTYMSEVVAPEGWNDWRDPSRDQLVT 189
VFS TYMS ++ PEGWN+W D ++++ VT
Sbjct: 313 VVFSNTYMSGIITPEGWNNWGDSTKEKTVT 342
>gb|AAO22722.1| putative pectinesterase family protein [Arabidopsis thaliana]
Length = 407
Score = 114 bits (285), Expect = 5e-25
Identities = 53/90 (58%), Positives = 71/90 (78%)
Frame = -3
Query: 458 LYEGCTIHSIAKPDWDGVSGSITAQGRQSINEETGFSLVNGTILGTGNVWLGRAGGAFST 279
LY+ CTI+SIAK + GV+GSITAQGRQS +E++GFS VN I G+G + LGRA GA++T
Sbjct: 253 LYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAWGAYAT 312
Query: 278 AVFSKTYMSEVVAPEGWNDWRDPSRDQLVT 189
VFS TYMS ++ PEGWN+W D ++++ VT
Sbjct: 313 VVFSNTYMSGIITPEGWNNWGDSTKEKTVT 342
>ref|NP_172023.1| pectinesterase family; protein id: At1g05310.1 [Arabidopsis
thaliana]
Length = 393
Score = 96.3 bits (238), Expect = 1e-19
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = -3
Query: 458 LYEGCTIHSIAK---PDWDGVSGSITAQGRQSINEETGFSLVNGTILGTGNVWLGRAGGA 288
LY+ C I S+A P V+G++TA GR S +E +GFS VN TI GTG+VWLGRA
Sbjct: 253 LYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAWRP 312
Query: 287 FSTAVFSKTYMSEVVAPEGWNDWRDPSRDQLV 192
+S VF T M++V+APEGWN++ DPSRD +
Sbjct: 313 YSRVVFVSTTMTDVIAPEGWNNFNDPSRDATI 344
>pir||H86187 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388565|gb|AAB71446.1| Similar to Prunus
pectinesterase (gb|X95991). [Arabidopsis thaliana]
Length = 391
Score = 96.3 bits (238), Expect = 1e-19
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = -3
Query: 458 LYEGCTIHSIAK---PDWDGVSGSITAQGRQSINEETGFSLVNGTILGTGNVWLGRAGGA 288
LY+ C I S+A P V+G++TA GR S +E +GFS VN TI GTG+VWLGRA
Sbjct: 251 LYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAWRP 310
Query: 287 FSTAVFSKTYMSEVVAPEGWNDWRDPSRDQLV 192
+S VF T M++V+APEGWN++ DPSRD +
Sbjct: 311 YSRVVFVSTTMTDVIAPEGWNNFNDPSRDATI 342
>ref|NP_197474.1| pectinesterase family; protein id: At5g19730.1, supported by cDNA:
gi_17529289, supported by cDNA: gi_20465498 [Arabidopsis
thaliana] gi|17529290|gb|AAL38872.1| putative pectin
methylesterase [Arabidopsis thaliana]
gi|20465499|gb|AAM20209.1| putative pectin
methylesterase [Arabidopsis thaliana]
Length = 383
Score = 95.5 bits (236), Expect = 2e-19
Identities = 45/89 (50%), Positives = 59/89 (65%)
Frame = -3
Query: 458 LYEGCTIHSIAKPDWDGVSGSITAQGRQSINEETGFSLVNGTILGTGNVWLGRAGGAFST 279
LYEGC +H+IA G++TAQGR S+ E+TGFS V + GTG ++LGRA G FS
Sbjct: 254 LYEGCHVHAIADK-----LGAVTAQGRSSVLEDTGFSFVKCKVTGTGVLYLGRAWGPFSR 308
Query: 278 AVFSKTYMSEVVAPEGWNDWRDPSRDQLV 192
VF+ TYM ++ P GW +W DPSR+ V
Sbjct: 309 VVFAYTYMDNIILPRGWYNWGDPSREMTV 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,865,721
Number of Sequences: 1393205
Number of extensions: 11052478
Number of successful extensions: 33216
Number of sequences better than 10.0: 251
Number of HSP's better than 10.0 without gapping: 31570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33067
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
