Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011047A_C01 KMC011047A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565418.1| putative mitotic control protein dis3; protein ... 130 1e-29
pir||A84553 probable mitotic control protein dis3 [imported] - A... 130 1e-29
gb|AAN17392.1| Putative mitotic control protein dis3 [Oryza sati... 107 2e-22
dbj|BAA85401.1| EST AU068209(C12438) corresponds to a region of ... 65 1e-09
ref|NP_501835.1| Mitotic control protein dis3 (116.7 kD) [Caenor... 46 4e-04
>ref|NP_565418.1| putative mitotic control protein dis3; protein id: At2g17510.1,
supported by cDNA: gi_15982744, supported by cDNA:
gi_19699185 [Arabidopsis thaliana]
gi|15982745|gb|AAL09713.1| At2g17510/MJB20.7 [Arabidopsis
thaliana] gi|19699186|gb|AAL90959.1| At2g17510/MJB20.7
[Arabidopsis thaliana] gi|20198264|gb|AAD32908.2|
putative mitotic control protein dis3 [Arabidopsis
thaliana]
Length = 933
Score = 130 bits (328), Expect = 1e-29
Identities = 60/73 (82%), Positives = 68/73 (92%)
Frame = -2
Query: 634 GFFVFVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHMEVVE 455
GF VFVPKYGIEGPVYLT + EKG GDWYVDE++QKI KMDGS+SYS+LQ+V+IHMEVVE
Sbjct: 861 GFIVFVPKYGIEGPVYLTGKGEKGAGDWYVDEEKQKIVKMDGSLSYSVLQTVKIHMEVVE 920
Query: 454 PQPNRPKLQLTLI 416
PQPNRPKLQLTL+
Sbjct: 921 PQPNRPKLQLTLL 933
>pir||A84553 probable mitotic control protein dis3 [imported] - Arabidopsis
thaliana
Length = 955
Score = 130 bits (328), Expect = 1e-29
Identities = 60/73 (82%), Positives = 68/73 (92%)
Frame = -2
Query: 634 GFFVFVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHMEVVE 455
GF VFVPKYGIEGPVYLT + EKG GDWYVDE++QKI KMDGS+SYS+LQ+V+IHMEVVE
Sbjct: 883 GFIVFVPKYGIEGPVYLTGKGEKGAGDWYVDEEKQKIVKMDGSLSYSVLQTVKIHMEVVE 942
Query: 454 PQPNRPKLQLTLI 416
PQPNRPKLQLTL+
Sbjct: 943 PQPNRPKLQLTLL 955
>gb|AAN17392.1| Putative mitotic control protein dis3 [Oryza sativa (japonica
cultivar-group)]
Length = 896
Score = 107 bits (266), Expect = 2e-22
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = -2
Query: 634 GFFVFVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHMEVVE 455
GF VFVPK+GIEGP+YLT + +KG GDW VDE Q++ K +VSY++LQ+V IHMEVVE
Sbjct: 825 GFIVFVPKFGIEGPIYLTPKGDKG-GDWVVDEVHQRVTKPGTNVSYAVLQTVMIHMEVVE 883
Query: 454 PQPNRPKLQLTLI 416
PQP+RPKLQLTLI
Sbjct: 884 PQPHRPKLQLTLI 896
>dbj|BAA85401.1| EST AU068209(C12438) corresponds to a region of the predicted
gene.~similar to Dis3p protein - human. (JE0110) [Oryza
sativa (japonica cultivar-group)]
Length = 908
Score = 64.7 bits (156), Expect = 1e-09
Identities = 29/53 (54%), Positives = 40/53 (74%)
Frame = -2
Query: 622 FVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHME 464
F ++GIEGP+YLT + +KG GDW VDE Q++ K +VSY++LQ+V IHME
Sbjct: 830 FRTRFGIEGPIYLTPKGDKG-GDWVVDEVHQRVTKPGTNVSYAVLQTVMIHME 881
>ref|NP_501835.1| Mitotic control protein dis3 (116.7 kD) [Caenorhabditis elegans]
gi|2500548|sp|Q17632|RR44_CAEEL Probable exosome complex
exonuclease RRP44 (Ribosomal RNA processing protein 44)
(DIS3 protein homolog) gi|7495386|pir||T18925
hypothetical protein C04G2.6 - Caenorhabditis elegans
gi|3873904|emb|CAA94677.1| Hypothetical protein C04G2.6
[Caenorhabditis elegans]
Length = 1029
Score = 46.2 bits (108), Expect = 4e-04
Identities = 27/73 (36%), Positives = 40/73 (53%)
Frame = -2
Query: 634 GFFVFVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHMEVVE 455
G VFVPKYG+E + L T A G +D +E + K++G V L+ V + + V E
Sbjct: 940 GIQVFVPKYGLESIIVLQTSAASGT---TIDVEEMSV-KVNGDVVIKELEPVTVRISVNE 995
Query: 454 PQPNRPKLQLTLI 416
RP+++L LI
Sbjct: 996 KNQQRPRVELQLI 1008
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,428,885
Number of Sequences: 1393205
Number of extensions: 12023004
Number of successful extensions: 26835
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26826
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
