Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011034A_C01 KMC011034A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana] 69 2e-15
gb|AAL69489.2| putative RNA helicase [Arabidopsis thaliana] 69 3e-15
ref|NP_200922.1| RNA helicase - like protein; protein id: At5g61... 34 1e-04
gb|EAA36222.1| hypothetical protein [Neurospora crassa] 38 0.004
ref|XP_125617.1| RIKEN cDNA B630009I04 [Mus musculus] gi|2161897... 30 0.024
>dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana]
Length = 2157
Score = 69.3 bits (168), Expect(2) = 2e-15
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -1
Query: 595 LAISCTSELYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSIGEL 422
L + TSEL+A+KRVSF+ L T M+LP + ++ KLILVSDCY+GFEQEHSI +L
Sbjct: 2096 LGDTSTSELFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQL 2153
Score = 34.3 bits (77), Expect(2) = 2e-15
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 635 RFPKIKEEQWWLILGN 588
RFPK+K+E WWL+LG+
Sbjct: 2083 RFPKVKDEAWWLVLGD 2098
>gb|AAL69489.2| putative RNA helicase [Arabidopsis thaliana]
Length = 805
Score = 69.3 bits (168), Expect(2) = 3e-15
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -1
Query: 595 LAISCTSELYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSIGEL 422
L + TSEL+A+KRVSF+ L T M+LP + ++ KLILVSDCY+GFEQEHSI +L
Sbjct: 744 LGDTSTSELFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQL 801
Score = 34.3 bits (77), Expect(2) = 3e-15
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 635 RFPKIKEEQWWLILGN 588
RFPK+K+E WWL+LG+
Sbjct: 731 RFPKVKDEAWWLVLGD 746
>ref|NP_200922.1| RNA helicase - like protein; protein id: At5g61140.1 [Arabidopsis
thaliana]
Length = 2137
Score = 34.3 bits (77), Expect(2) = 1e-04
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 635 RFPKIKEEQWWLILGN 588
RFPK+K+E WWL+LG+
Sbjct: 2072 RFPKVKDEAWWLVLGD 2087
Score = 32.7 bits (73), Expect(2) = 1e-04
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = -1
Query: 595 LAISCTSELYALKRVSFSDHLNTSMKLP 512
L + TSEL+A+KRVSF+ L T M+LP
Sbjct: 2085 LGDTSTSELFAVKRVSFTGRLITRMELP 2112
>gb|EAA36222.1| hypothetical protein [Neurospora crassa]
Length = 2209
Score = 37.7 bits (86), Expect(2) = 0.004
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 571 LYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSIGELV 419
L A+KRV+ LN ++ + + ++KL+L+SD Y+G +Q+ + +V
Sbjct: 2142 LLAIKRVTIGKKLNVRLEFTVPTPGRHDLKLMLMSDSYVGVDQDPAFSVMV 2192
Score = 24.3 bits (51), Expect(2) = 0.004
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 632 FPKIKEEQWWLILGNK 585
+P K E WWL++G +
Sbjct: 2122 YPGKKTENWWLVVGEE 2137
>ref|XP_125617.1| RIKEN cDNA B630009I04 [Mus musculus] gi|21618977|gb|AAH32189.1|
RIKEN cDNA B630009I04 gene [Mus musculus]
Length = 271
Score = 29.6 bits (65), Expect(2) = 0.024
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 574 ELYALKRVSF-SDHLNTSMKL--PLTSANLEEMKLILVSDCYIGFEQEHSI 431
EL A+KRV F H + S+ P T L L+SDCY+G +Q++ I
Sbjct: 200 ELMAVKRVGFVRTHHDASISFFTPETPGRYI-FTLYLMSDCYLGLDQQYDI 249
Score = 29.6 bits (65), Expect(2) = 0.024
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -3
Query: 635 RFPKIKEEQWWLILG 591
RFPK+K+E W+LILG
Sbjct: 180 RFPKLKDEGWFLILG 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,948,828
Number of Sequences: 1393205
Number of extensions: 11037349
Number of successful extensions: 21286
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21277
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
