Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011025A_C01 KMC011025A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00100520.1| hypothetical protein [Desulfitobacterium hafni... 32 8.0
ref|NP_701946.1| hypothetical protein [Plasmodium falciparum 3D7... 32 8.0
>gb|ZP_00100520.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 115
Score = 31.6 bits (70), Expect = 8.0
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +3
Query: 468 KPSHWSHTGLAWSSCRFWAFWSSPSLASP 554
+P WS G+AW++ A+W S SLA+P
Sbjct: 19 RPYIWSAVGVAWAASLALAWWWSQSLAAP 47
>ref|NP_701946.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497121|gb|AAN36670.1|AE014816_55 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1361
Score = 31.6 bits (70), Expect = 8.0
Identities = 13/54 (24%), Positives = 27/54 (49%)
Frame = +3
Query: 99 SILVIPNRTNIKT*TRKQSSTNSNSTTTKQGDKNDQSLAMEMDHRKLVNYVNKV 260
+I I NI T K++ N N+ +KN++ + + D K+++Y+ +
Sbjct: 748 NIYYISKENNIYIDTEKKNKINKNNNNNNNNNKNNKIIINDKDLNKMMSYIKNI 801
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,602,746
Number of Sequences: 1393205
Number of extensions: 10164328
Number of successful extensions: 21577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21532
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
